Gene: Solyc11g072940.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g072940.2
  • Transcript Identifier Solyc11g072940.2.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 54158825-54165653 : positive

Gene Family Information

  • ID HOM05M002212
  • #Genes/#Species 165/53
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g072940.2.1
  • uniprot A0A3Q7J235

Descriptions

  • Description NOT2/NOT3/NOT5-like protein (AHRD V3.3 *** A0A2U1KP40_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0000289
IBA
GOA Databasenuclear-transcribed mRNA poly(A) tail shortening
GO:0015074
ISO
PLAZA Integrative OrthologyDNA integration AT5G59710

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G07705
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G59710

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030015
IBA
IEA
GOA DatabaseCCR4-NOT core complex
GO:0030015
IEA
InterProCCR4-NOT core complex
GO:0000932
IBA
GOA DatabaseP-body
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G59710

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007282 NOT2/NOT3/NOT5, C-terminal
IPR038635 CCR4-NOT complex subunit 2/3/5, N-terminal domain superfamily
IPR040168 Not2/Not3/Not5
Mapman id Description
16.4.2.1.2.4 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT2