Gene: Solyc11g068770.1

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g068770.1
  • Transcript Identifier Solyc11g068770.1.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 51468673-51469530 : positive

Gene Family Information

  • ID HOM05M000378
  • #Genes/#Species 716/52
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g068770.1.1
  • uniprot A0A3Q7JPF4

Descriptions

  • Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein (AHRD V3.3 *** A0A2U1M9A7_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000289
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA poly(A) tail shortening AT3G44260
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT3G44260
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT3G44260
GO:0002213
ISO
PLAZA Integrative Orthologydefense response to insect AT3G44260
GO:0043928
IBA
GOA Databaseexonucleolytic catabolism of deadenylated mRNA
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G44260
GO:0008408
ISO
PLAZA Integrative Orthology3'-5' exonuclease activity AT3G44260
GO:0004535
IBA
IEA
GOA Databasepoly(A)-specific ribonuclease activity
GO:0004535
IEA
InterPropoly(A)-specific ribonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004527
IEA
GOA Databaseexonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030015
IBA
GOA DatabaseCCR4-NOT core complex
GO:0000932
IBA
GOA DatabaseP-body
GO:0030014
IEA
GOA DatabaseCCR4-NOT complex
GO:0030014
IEA
InterProCCR4-NOT complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006941 Ribonuclease CAF1
IPR039637 CCR4-NOT transcription complex subunit 7/8/Pop2
IPR036397 Ribonuclease H superfamily
IPR012337 Ribonuclease H-like superfamily
Mapman id Description
16.4.2.1.2.2 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CAF1