Gene: Solyc09g008380.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc09g008380.3
  • Transcript Identifier Solyc09g008380.3.1
  • Gene Type Coding gene
  • Location SL4.0ch09 : 1878994-1883868 : positive

Gene Family Information

  • ID HOM05M000282
  • #Genes/#Species 889/50
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc09g008380.3.1
  • uniprot A0A3Q7ISW2

Descriptions

  • Description Pectate lyase (AHRD V3.3 *** A0A2G2VX49_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045490
IEA
GOA Databasepectin catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030570
IEA
GOA Databasepectate lyase activity
GO:0030570
IEA
InterPropectate lyase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016829
IEA
GOA Databaselyase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0031225
ISO
PLAZA Integrative Orthologyanchored component of membrane AT3G53190

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002022 Pectate lyase
IPR045032 Pectin lyase family
IPR011050 Pectin lyase fold/virulence factor
IPR012334 Pectin lyase fold
IPR018082 AmbAllergen
Mapman id Description
21.3.5.2 Cell wall organisation.pectin.modification and degradation.pectate lyase