Gene: Solyc08g076390.3

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc08g076390.3
Transcript Identifier Solyc08g076390.3.1
Gene Type Coding gene
Location SL4.0ch08 : 58512647-58518055 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05M000341
#Genes/#Species 781/53
Phylogenetic origin

ID ORTHO05M003219
#Genes/#Species 131/48
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

tid Solyc08g076390.3.1
uniprot A0A3Q7HTL1

Descriptions

Short descriptions
Ortholog descriptions

Description Transcription factor jumonji (Jmj) family protein / zinc finger (C5HC2 type) family protein (AHRD V3.3 *** F4KIX0_ARATH)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0034721	IEA	GOA Database	histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0016577	IEA	GOA Database	histone demethylation
GO:0006338	IBA	GOA Database	chromatin remodeling
GO:0045815	ISO	PLAZA Integrative Orthology	positive regulation of gene expression, epigenetic	Os10g0577600
GO:0006355	ISO	PLAZA Integrative Orthology	regulation of transcription, DNA-templated	AT5G46910
GO:0010200	ISO	PLAZA Integrative Orthology	response to chitin	AT5G46910
GO:0048439	ISO	PLAZA Integrative Orthology	flower morphogenesis	Os10g0577600

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0034647	IBA	GOA Database	histone demethylase activity (H3-trimethyl-K4 specific)
GO:0032452	IBA	GOA Database	histone demethylase activity
GO:0032454	ISO	PLAZA Integrative Orthology	histone demethylase activity (H3-K9 specific)	Os10g0577600

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	IBA	GOA Database	nucleus
GO:0000792	ISO	PLAZA Integrative Orthology	heterochromatin	Os10g0577600

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003347	JmjC domain
IPR004198	Zinc finger, C5HC2-type
IPR003349	JmjN domain

Mapman id	Description
12.3.3.8.5	Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM8)