Gene: Solyc06g065730.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g065730.3
  • Transcript Identifier Solyc06g065730.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 38810438-38848713 : positive

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g065730.3.1
  • uniprot A0A3Q7GVY3

Descriptions

  • Description CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3 *** A0A2G2ZAQ4_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT2G25170
GO:0051301
ISO
PLAZA Integrative Orthologycell division AT2G25170
GO:0009739
ISO
PLAZA Integrative Orthologyresponse to gibberellin AT2G25170
GO:0009992
ISO
PLAZA Integrative Orthologycellular water homeostasis AT2G25170
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT2G25170
GO:2000023
ISO
PLAZA Integrative Orthologyregulation of lateral root development AT2G25170
GO:0009736
ISO
PLAZA Integrative Orthologycytokinin-activated signaling pathway AT2G25170
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT2G25170
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT2G25170
GO:0009788
ISO
PLAZA Integrative Orthologynegative regulation of abscisic acid-activated signaling pathway AT2G25170

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G25170

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009463 Domain of unknown function DUF1087
IPR016197 Chromo-like domain superfamily
IPR009462 Domain of unknown function DUF1086
IPR038718 SNF2-like, N-terminal domain superfamily
IPR023780 Chromo domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR012957 CHD, C-terminal 2
IPR000953 Chromo/chromo shadow domain
IPR000330 SNF2, N-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
12.4.7.2 Chromatin organisation.nucleosome remodeling.CHD chromatin remodeling activities.CHD3-type chromatin remodeling factor (PKL/PKR)