Gene: Solyc06g063000.3

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc06g063000.3
Transcript Identifier Solyc06g063000.3.1
Gene Type Coding gene
Location SL4.0ch06 : 37419737-37424829 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05M001833
#Genes/#Species 191/50
Phylogenetic origin

ID ORTHO05M002416
#Genes/#Species 161/50
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

tid Solyc06g063000.3.1
uniprot A0A3Q7GY69

Descriptions

Short descriptions
Ortholog descriptions

Description Oligouridylate-binding protein 1A (AHRD V3.3 *** A0A2G3C8H4_CAPCH)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0034063	ISO	PLAZA Integrative Orthology	stress granule assembly	AT3G14100
GO:0071456	ISO	PLAZA Integrative Orthology	cellular response to hypoxia	AT3G14100

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	GOA Database	nucleic acid binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0003723	IEA	GOA Database	RNA binding
GO:0003729	IBA	GOA Database	mRNA binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT1G54080

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT3G14100
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT3G14100

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR000504	RNA recognition motif domain
IPR035979	RNA-binding domain superfamily

Mapman id	Description
16.8.3	RNA processing.mRNA sequestration.mRNA-binding regulatory factor (UBP1)