Gene: Solyc05g054920.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc05g054920.4
  • Transcript Identifier Solyc05g054920.4.1
  • Gene Type Coding gene
  • Location SL4.0ch05 : 64101661-64105295 : positive

Gene Family Information

  • ID HOM05M001899
  • #Genes/#Species 186/50
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc05g054920.4.1
  • uniprot A0A3Q7GP22

Descriptions

  • Description Serine/arginine-rich-splicing factor RS2Z32 (AHRD V3.3 *-* A0A0M8KRK6_NICAT)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0000245
ISO
PLAZA Integrative Orthologyspliceosomal complex assembly AT2G37340

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G37340

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
IBA
GOA Databasenuclear speck

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR036875 Zinc finger, CCHC-type superfamily
IPR001878 Zinc finger, CCHC-type
Mapman id Description
16.2.6.5 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RSZ32/33)