Gene: Solyc04g078300.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g078300.3
  • Transcript Identifier Solyc04g078300.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 61041991-61045284 : positive

Gene Family Information

  • ID HOM05M000041
  • #Genes/#Species 3286/53
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g078300.3.1
  • uniprot A0A3Q7G8U5

Descriptions

  • Description MADS-box transcription factor (AHRD V3.3 *** A0A2K3PNN3_TRIPR)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080092
ISO
PLAZA Integrative Orthologyregulation of pollen tube growth AT1G22130
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT1G77980
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT1G22130
GO:0010152
ISO
PLAZA Integrative Orthologypollen maturation AT1G22130
GO:0006357
IBA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0045944
IEA
GOA Databasepositive regulation of transcription by RNA polymerase II
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000978
IBA
GOA DatabaseRNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G22130
GO:0003700
ISO
PLAZA Homology (enrichment)DNA-binding transcription factor activity HOM05M000041
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0000981
IBA
GOA DatabaseDNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000977
IEA
GOA DatabaseRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000977
IEA
InterProRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0046983
IEA
GOA Databaseprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G77950
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002100 Transcription factor, MADS-box
IPR033896 MADS MEF2-like
IPR036879 Transcription factor, MADS-box superfamily
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)