Gene: Solyc03g093350.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g093350.4
  • Transcript Identifier Solyc03g093350.4.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 49177722-49179992 : negative

Gene Family Information

  • ID HOM05M003620
  • #Genes/#Species 106/51
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g093350.4.1
  • uniprot A0A3Q7GAV8

Descriptions

  • Description KH_1 domain-containing protein/RRM_1 domain-containing protein (AHRD V3.3 *** A0A1Q3D9P8_CEPFO)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0048024
IBA
GOA Databaseregulation of mRNA splicing, via spliceosome
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT5G51300

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G51300

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G51300
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT5G51300

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036612 K Homology domain, type 1 superfamily
IPR004087 K Homology domain
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR032570 Splicing factor 1, helix-hairpin domain
IPR004088 K Homology domain, type 1
IPR036875 Zinc finger, CCHC-type superfamily
IPR001878 Zinc finger, CCHC-type
IPR045071 KH domain-containing BBP-like
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.1.2.9 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing factor (SF1)