Gene: Solyc03g033530.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g033530.4
  • Transcript Identifier Solyc03g033530.4.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 4935024-4941580 : negative

Gene Family Information

  • ID HOM05M001918
  • #Genes/#Species 184/52
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g033530.4.1
  • uniprot A0A3Q7FFT9

Descriptions

  • Description DNA-(apurinic or apyrimidinic site) lyase (AHRD V3.3 *** A0A2G2ZMB4_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080111
ISO
PLAZA Integrative OrthologyDNA demethylation AT4G36050
GO:0006629
ISO
PLAZA Homology (enrichment)lipid metabolic process HOM05M001918
GO:0006284
IBA
GOA Databasebase-excision repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0046403
ISO
PLAZA Integrative Orthologypolynucleotide 3'-phosphatase activity AT4G36050
GO:0004527
ISO
PLAZA Integrative Orthologyexonuclease activity AT4G36050
GO:0008081
ISO
PLAZA Homology (enrichment)phosphoric diester hydrolase activity HOM05M001918
GO:0008311
IBA
GOA Databasedouble-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0004528
IBA
GOA Databasephosphodiesterase I activity
GO:0003906
IBA
GOA DatabaseDNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004518
IEA
InterPronuclease activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036691 Endonuclease/exonuclease/phosphatase superfamily
IPR010666 Zinc finger, GRF-type
IPR005135 Endonuclease/exonuclease/phosphatase
IPR004808 AP endonuclease 1
Mapman id Description
14.5.10.2 DNA damage response.base excision repair (BER).apurinic/apyrimidinic (AP) endonuclease activities.AP-endonuclease (APE2)