Gene: Solyc02g085710.4
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc02g085710.4
- Transcript Identifier Solyc02g085710.4.1
- Gene Type Coding gene
- Location SL4.0ch02 : 46537243-46538361 : positive
Gene Family Information
- ID HOM05M001242
- #Genes/#Species 268/53
- Specific Family
- ID ORTHO05M001735
- #Genes/#Species 200/52
- Specific Family
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc02g085710.4.1
Descriptions
- Description Geranylgeranyl pyrophosphate synthase, chloroplastic (AHRD V3.3 *** A0A2G2XGF3_CAPBA)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008299 | IEA | InterPro | isoprenoid biosynthetic process | |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT4G36810 |
| GO:0045337 | ISO | PLAZA Integrative Orthology | farnesyl diphosphate biosynthetic process | AT3G32040 |
| GO:0043693 | ISO | PLAZA Integrative Orthology | monoterpene biosynthetic process | AT4G36810 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004161 | ISO | PLAZA Integrative Orthology | dimethylallyltranstransferase activity | AT4G36810 |
| GO:0044687 | ISO | PLAZA Integrative Orthology | geranylfarnesyl diphosphate synthase activity | AT3G32040 |
| GO:0004311 | ISO | PLAZA Integrative Orthology | farnesyltranstransferase activity | AT1G49530 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G36810 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005783 | ISO | PLAZA Integrative Orthology | endoplasmic reticulum | AT2G23800 |
| GO:0009536 | ISO | PLAZA Integrative Orthology | plastid | AT4G36810 |
| GO:0009513 | ISO | PLAZA Integrative Orthology | etioplast | AT4G36810 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT3G32040 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT1G49530 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT4G36810 |
| GO:0010287 | ISO | PLAZA Integrative Orthology | plastoglobule | AT3G32040 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 9.1.3.3 | Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.isoprenyl diphosphate synthase (IDS) |