Gene: Solyc01g080660.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g080660.3
  • Transcript Identifier Solyc01g080660.3.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 72474487-72478664 : negative

Gene Family Information

  • ID HOM05M000998
  • #Genes/#Species 328/53
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g080660.3.1
  • uniprot A0A3Q7EI51

Descriptions

  • Description serine/arginine-rich SC35-like splicing factor SCL28 (AHRD V3.3 *-* A0A2I4G9K3_9ROSI)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT3G55460

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT3G55460
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G18810
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G55460

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm
GO:0016607
IBA
GOA Databasenuclear speck
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G18810

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR003954 RNA recognition motif domain, eukaryote
Mapman id Description
16.2.6.2 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SCL28/30/33)