Gene: Os11g0200000

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os11g0200000
  • Transcript Identifier Os11t0200000-01
  • Gene Type Coding gene
  • Location chr11 : 5028019-5029389 : negative

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid Os11t0200000-01
  • MSU-ID LOC_Os11g09370.1
  • uniprot Q2R9B1

Descriptions

  • Description Histone deacetylase family protein.

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1990619
ISO
PLAZA Integrative Orthologyhistone H3-K9 deacetylation AT3G44680
GO:1900055
ISO
PLAZA Integrative Orthologyregulation of leaf senescence AT3G44680
GO:0010187
ISO
PLAZA Integrative Orthologynegative regulation of seed germination AT3G44680
GO:0016575
IEA
GOA Databasehistone deacetylation
GO:0016575
IEA
InterProhistone deacetylation
GO:0006325
IEA
GOA Databasechromatin organization
GO:0070932
IEA
GOA Databasehistone H3 deacetylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT3G44680
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G44680
GO:0004407
IEA
GOA Databasehistone deacetylase activity
GO:0004407
IEA
InterProhistone deacetylase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0032041
IEA
GOA DatabaseNAD-dependent histone deacetylase activity (H3-K14 specific)

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G44680
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G44680
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000286 Histone deacetylase family
IPR037138 Histone deacetylase domain superfamily
IPR023801 Histone deacetylase domain
IPR003084 Histone deacetylase
IPR023696 Ureohydrolase domain superfamily
Mapman id Description
12.3.2.1.1.3 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.histone deacetylase (HDA8)