Gene: Os11g0186400

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os11g0186400
  • Transcript Identifier Os11t0186400-00
  • Gene Type Coding gene
  • Location chr11 : 4387835-4397761 : negative

Gene Family Information

  • ID HOM05M001741
  • #Genes/#Species 199/52
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os11t0186400-00
  • MSU-ID LOC_Os11g08330.1
  • symbol-oryzabase OspolD1
  • symbol-oryzabase OsPoldelta1
  • symbol-CGSNL POLD1
  • name-CGSNL DELTA 1
  • name-CGSNL POLYMERASE (DNA DIRECTED)
  • uniprot Q9LRE6

Descriptions

  • Description Similar to DNA polymerase delta catalytic subunit (EC 2.7.7.7).
  • name-oryzabase DNA polymerase delta 1
  • name-oryzabase OsPol delta large subunit
  • name-oryzabase pol delta catalytic subunit

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT1G67500
GO:0006974
ISO
PLAZA Integrative Orthologycellular response to DNA damage stimulus AT1G67500
GO:0009411
ISO
PLAZA Integrative Orthologyresponse to UV AT1G67500
GO:0071494
ISO
PLAZA Integrative Orthologycellular response to UV-C AT1G67500
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G67500
GO:0006297
IBA
GOA Databasenucleotide-excision repair, DNA gap filling
GO:0006287
IBA
GOA Databasebase-excision repair, gap-filling
GO:0006261
IBA
GOA DatabaseDNA-dependent DNA replication
GO:0045004
IBA
GOA DatabaseDNA replication proofreading
GO:0006260
IEA
GOA DatabaseDNA replication
GO:0071897
IEA
GOA DatabaseDNA biosynthetic process
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004518
IEA
GOA Databasenuclease activity
GO:0008296
IBA
GOA Database3'-5'-exodeoxyribonuclease activity
GO:0003887
IBA
IEA
GOA DatabaseDNA-directed DNA polymerase activity
GO:0003887
IEA
InterProDNA-directed DNA polymerase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043625
IBA
GOA Databasedelta DNA polymerase complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012337 Ribonuclease H-like superfamily
IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain
IPR006172 DNA-directed DNA polymerase, family B
IPR025687 C4-type zinc-finger of DNA polymerase delta
IPR042087 DNA polymerase family B, thumb domain
IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain
IPR036397 Ribonuclease H superfamily
IPR023211 DNA polymerase, palm domain superfamily
IPR043502 DNA/RNA polymerase superfamily
Mapman id Description
13.2.3.2.1 Cell cycle organisation.DNA replication.elongation.DNA polymerase delta complex.component POLD1