Gene: Os11g0148700
General Information
Structural Information
- Species Oryza sativa ssp. japonica
- Gene Identifier Os11g0148700
- Transcript Identifier Os11t0148700-01
- Gene Type Coding gene
- Location chr11 : 2248299-2252692 : negative
Gene Family Information
- ID HOM05M001662
- #Genes/#Species 207/51
- Phylogenetic origin
- ID ORTHO05M001877
- #Genes/#Species 189/51
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Os11t0148700-01
- MSU-ID LOC_Os11g05130.1
- MSU-ID LOC_Os11g05130.2
- symbol-oryzabase OsPHD42
- symbol-CGSNL PHD42
- name-CGSNL PHD FINGER PROTEIN 42
- uniprot Q0IUL9
Descriptions
- Description Zinc finger, RING/FYVE/PHD-type domain containing protein.
- name-oryzabase PHD finger protein 42
- name-oryzabase Plant homeo-domain finger protein 42
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT5G35210 |
| GO:0010019 | ISO | PLAZA Integrative Orthology | chloroplast-nucleus signaling pathway | AT5G35210 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G22760 |
| GO:0035064 | ISO | PLAZA Integrative Orthology | methylated histone binding | AT5G35210 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009707 | ISO | PLAZA Integrative Orthology | chloroplast outer membrane | AT5G35210 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G35210 |
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT5G35210 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.4.2.2.1 | Chromatin organisation.nucleosome remodeling.ISWI chromatin remodeling complexes.ISWI-CDM complex.component DDP |
| 15.5.29 | RNA biosynthesis.transcriptional regulation.transcription factor (PHD) |