Anchorpoints
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
| Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|---|
| Arabidopsis thaliana | AT2G27600 | AAA-type ATPase family protein Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function. SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1)%3B FUNCTIONS IN: nucleoside-triphosphatase activity%2C nucleotide binding%2C ATP binding%3B INVOLVED IN: vesicle-mediated transport%2C endosome organization%3B LOCATED IN: cytoplasm%2C multivesicular body%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-type%2C conserved site (InterPro:IPR003960)%2C Vps4 oligomerisation%2C C-terminal (InterPro:IPR015415)%2C MIT (InterPro:IPR007330)%3B BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1)%3B Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476%3B Bacteria - 10868%3B Metazoa - 5113%3B Fungi - 3519%3B Plants - 2854%3B Viruses - 27%3B Other Eukaryotes - 6834 (source: NCBI BLink). | Chr2 | + | View |
| Glycine max | Glyma.13G317300 | PTHR23074:SF93 - F10A12.27/F10A12.27 | Gm13 | + | View |
| Glycine max | Glyma.12G183700 | K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) | Gm12 | - | View |
| Glycine max | Glyma.11G184700 | K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) | Gm11 | + | View |
| Glycine max | Glyma.12G087700 | K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) | Gm12 | - | View |
| Populus trichocarpa | Potri.009G144300 | K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) | Chr09 | + | View |
| Populus trichocarpa | Potri.010G237100 | K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) | Chr10 | + | View |
| Populus trichocarpa | Potri.004G184500 | K12196 - vacuolar protein-sorting-associated protein 4 (VPS4) | Chr04 | + | View |