Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc06g076040.3 RING-type E3 ubiquitin transferase (AHRD V3.3 *** A0A2G2WNK7_CAPBA) SL4.0ch06 - View
Solyc11g008390.2 RING-type E3 ubiquitin transferase (AHRD V3.3 *** A0A1U8EX65_CAPAN) SL4.0ch11 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aegilops tauschii AET4Gv20529400 4D - View
Arabidopsis thaliana AT2G28830 armadillo/beta-catenin repeat protein Encodes a U-box E3 ubiquitin ligase involved in ubiquitination of pattern recognition receptor FLS2. PLANT U-BOX 12 (PUB12)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C structural constituent of ribosome%2C rRNA binding%2C binding%3B INVOLVED IN: response to chitin%3B LOCATED IN: ubiquitin ligase complex%2C ribosome%2C intracellular%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein L16 (InterPro:IPR000114)%2C U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Ribosomal protein L10e/L16 (InterPro:IPR016180)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%2C Ribosomal protein L16%2C conserved site (InterPro:IPR020798)%3B BEST Arabidopsis thaliana protein match is: plant U-box 13 (TAIR:AT3G46510.1)%3B Has 16927 Blast hits to 15027 proteins in 4135 species: Archae - 0%3B Bacteria - 5491%3B Metazoa - 1535%3B Fungi - 908%3B Plants - 5936%3B Viruses - 3%3B Other Eukaryotes - 3054 (source: NCBI BLink). Chr2 - View
Brachypodium distachyon Bradi1g66610 PTHR23315//PTHR23315:SF69 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 12-RELATED Bd1 - View
Calamus simplicifolius CALSI_Maker00045482 scaffold850 + View
Calamus simplicifolius CALSI_Maker00030747 scaffold364 - View
Cenchrus purpureus GWHGAORA055450 GWHAORA00000012 + View
Cenchrus purpureus GWHGAORA027097 GWHAORA00000006 + View
Dioscorea dumetorum DDU059G0036 contig421 - View
Dioscorea dumetorum DDU550G0151 contig544 - View
Elaeis guineensis p5.00_sc00003_p0047 EG5.1_Chr5 - View
Elaeis guineensis p5.00_sc00069_p0084 EG5.1_Chr5 + View
Glycine max Glyma.18G176400 PTHR23315//PTHR23315:SF69 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 12-RELATED Gm18 - View
Glycine max Glyma.11G140100 PTHR23315//PTHR23315:SF69 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 12-RELATED Gm11 + View
Glycine max Glyma.12G063700 PTHR23315//PTHR23315:SF69 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 12-RELATED Gm12 + View
Hordeum vulgare Horvu_MOREX_4H01G327300 chr4H - View
Magnolia biondii MBI05_g22882_MAGBIO AED:0.12 Chr05 - View
Oryza alta GWHGAZTO023337 GWHAZTO00000003 + View
Oryza alta GWHGAZTO001773 GWHAZTO00000001 + View
Oryza brachyantha OB03G22430 Uncharacterized protein 3 + View
Oryza sativa ssp. japonica Os03g0275900 Similar to Protein spotted leaf 11. Similar to Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11). Hypothetical conserved gene. chr03 + View
Phyllostachys edulis PH02Gene00170 hic_scaffold_15 - View
Phyllostachys edulis PH02Gene03546 hic_scaffold_21 - View
Panicum hallii Pahal.9G514000 KOG0320//KOG0823 - Predicted E3 ubiquitin ligase // Predicted E3 ubiquitin ligase Chr09 - View
Panicum hallii Pahal.3G468300 PTHR23315//PTHR23315:SF122 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // SUBFAMILY NOT NAMED Chr03 - View
Populus trichocarpa Potri.009G029600 PTHR23315//PTHR23315:SF69 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 12-RELATED Chr09 - View
Populus trichocarpa Potri.010G226500 PTHR23315//PTHR23315:SF111 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 14 Chr10 + View
Populus trichocarpa Potri.001G238500 PTHR23315//PTHR23315:SF69 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 12-RELATED Chr01 - View
Populus trichocarpa Potri.008G035700 PTHR23315//PTHR23315:SF111 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 14 Chr08 - View
Sorghum bicolor Sobic.001G420500 similar to Spotted leaf protein 11, putative, expressed Chr01 - View
Setaria italica Seita.9G452400 scaffold_9 - View
Spirodela polyrhiza Spipo23G0020200 U-box domain-containing protein pseudo23 + View
Saccharum spontaneum Sspon.01G0038930-2C Chr1C + View
Setaria viridis Sevir.9G456100 KOG0320//KOG0823 - Predicted E3 ubiquitin ligase // Predicted E3 ubiquitin ligase Chr_09 - View
Triticum aestivum TraesCS4D03G0507700 TraesCS4D01G207700 Chr4D - View
Triticum aestivum TraesCS4A03G0201900 TraesCS4A01G097700 Chr4A + View
Triticum dicoccoides TRIDC4BG037090 4B - View
Triticum dicoccoides TRIDC4AG013310 4A + View
Triticum turgidum TRITD4Bv1G126670 U-box domain-containing protein chr4B - View
Triticum turgidum TRITD4Av1G044770 U-box domain-containing protein chr4A + View