Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc05g055450.3 Protein BTR1 (AHRD V3.3 *** A0A2G2XV39_CAPAN) SL4.0ch05 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Arabidopsis thaliana AT5G04430 binding to TOMV RNA 1L (long form) Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication. BINDING TO TOMV RNA 1S (SHORT FORM) (BTR1S)%3B FUNCTIONS IN: single-stranded RNA binding%2C nucleic acid binding%3B INVOLVED IN: RNA splicing%2C regulation of viral protein levels in host cell%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: K Homology%2C type 1%2C subgroup (InterPro:IPR018111)%2C K Homology (InterPro:IPR004087)%2C K Homology%2C type 1 (InterPro:IPR004088)%3B BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). binding to TOMV RNA 1L (long form) (BTR1L)%3B CONTAINS InterPro DOMAIN/s: K Homology%2C type 1%2C subgroup (InterPro:IPR018111)%2C K Homology (InterPro:IPR004087)%2C K Homology%2C type 1 (InterPro:IPR004088)%3B BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1)%3B Has 5613 Blast hits to 2614 proteins in 213 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 3980%3B Fungi - 530%3B Plants - 787%3B Viruses - 0%3B Other Eukaryotes - 308 (source: NCBI BLink). Chr5 - View
Glycine max Glyma.20G191700 K14944 - RNA-binding protein Nova (NOVA) Gm20 + View
Glycine max Glyma.10G198300 K14944 - RNA-binding protein Nova (NOVA) Gm10 - View
Populus trichocarpa Potri.008G030700 K14944 - RNA-binding protein Nova (NOVA) Chr08 + View
Populus trichocarpa Potri.010G230500 K14944 - RNA-binding protein Nova (NOVA) Chr10 - View