Functional clusters

Information

  • Type InterPro
  • Description DNA glycosylase, plant

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr2 5 CH_asa_130 5 6 0.000000000000203192
Allium sativum chr2 5 CH_asa_419 4 12 0.000000086401
Oryza alta GWHAZTO00000017 5 CH_oal_1741 2 2 0.000725448
Oryza brachyantha 2 5 CH_obr_332 3 13 0.0000305855
Oryza sativa ssp. indica Chr2 5 CH_osaindica_221 4 11 0.0000000171843
Oryza sativa ssp. japonica chr05 5 CH_osa_308 3 5 0.000000836619
Phyllostachys edulis hic_scaffold_20 5 CH_ped_412 3 4 0.0000016434
Solanum lycopersicum SL4.0ch04 5 CH_sly_454 3 6 0.00000578534
Saccharum spontaneum Chr4B 5 CH_ssp_1047 3 7 0.0000167275
Saccharum spontaneum Chr5D 5 CH_ssp_1527 3 15 0.000217235
Vanilla planifolia CM028157.1 5 CH_vpl_147 3 3 0.000000163789
Allium sativum chr2 6 CH_asa_130 5 6 0.000000000000203192
Allium sativum chr2 6 CH_asa_419 4 12 0.000000086401
Oryza alta GWHAZTO00000017 6 CH_oal_1741 2 2 0.000725448
Oryza brachyantha 2 6 CH_obr_332 3 13 0.0000305855
Oryza sativa ssp. indica Chr2 6 CH_osaindica_221 4 11 0.0000000171843
Oryza sativa ssp. japonica chr05 6 CH_osa_308 3 5 0.000000836619
Phyllostachys edulis hic_scaffold_20 6 CH_ped_412 3 4 0.0000016434
Solanum lycopersicum SL4.0ch04 6 CH_sly_454 3 6 0.00000578534
Saccharum spontaneum Chr4B 6 CH_ssp_1047 3 7 0.0000167275
Saccharum spontaneum Chr5D 6 CH_ssp_1527 3 15 0.000217235
Vanilla planifolia CM028157.1 6 CH_vpl_147 3 3 0.000000163789

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001