Functional clusters

Information

  • Type InterPro
  • Description Pentatricopeptide repeat-containing protein NFD5-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr5 5 CH_asa_367 3 3 0.0000000225282
Amborella trichopoda AmTr_v1.0_scaffold00011 5 CH_atr_614 2 3 0.000714919
Ceratophyllum demersum 9 5 CH_cde_538 2 2 0.000789796
Magnolia biondii Chr17 5 CH_mbi_1277 2 3 0.00087414
Physcomitrium patens Chr10 5 CH_ppa_184 2 2 0.0000612726
Sequoiadendron giganteum chr10 5 CH_sgi_2334 2 2 0.000292291
Solanum lycopersicum SL4.0ch07 5 CH_sly_295 3 4 0.000000082678
Spirodela polyrhiza pseudo20 5 CH_spo_366 2 2 0.000305764
Saccharum spontaneum Chr4D 5 CH_ssp_1440 2 2 0.000143154
Vanilla planifolia CM028160.1 5 CH_vpl_562 2 2 0.000221664
Allium sativum chr5 6 CH_asa_367 3 3 0.0000000225282
Amborella trichopoda AmTr_v1.0_scaffold00011 6 CH_atr_614 2 3 0.000714919
Ceratophyllum demersum 9 6 CH_cde_538 2 2 0.000789796
Magnolia biondii Chr17 6 CH_mbi_1277 2 3 0.00087414
Physcomitrium patens Chr10 6 CH_ppa_184 2 2 0.0000612726
Sequoiadendron giganteum chr10 6 CH_sgi_2334 2 2 0.000292291
Solanum lycopersicum SL4.0ch07 6 CH_sly_295 3 4 0.000000082678
Spirodela polyrhiza pseudo20 6 CH_spo_366 2 2 0.000305764
Saccharum spontaneum Chr4D 6 CH_ssp_1440 2 2 0.000143154
Vanilla planifolia CM028160.1 6 CH_vpl_562 2 2 0.000221664

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001