Functional clusters
Information
- Type InterPro
- Description Alcohol dehydrogenase, N-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr5 | 5 | CH_asa_1097 | 3 | 4 | 0.000187525 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_387 | 3 | 5 | 0.0000403107 |
| Amborella trichopoda | AmTr_v1.0_scaffold00040 | 5 | CH_atr_209 | 4 | 5 | 0.000000153868 |
| Brachypodium distachyon | Bd4 | 5 | CH_bdi_421 | 3 | 4 | 0.000113098 |
| Cenchrus purpureus | GWHAORA00000176 | 5 | CH_cpu_630 | 5 | 10 | 0.000000116524 |
| Dioscorea dumetorum | contig60 | 5 | CH_ddu_311 | 3 | 4 | 0.000128644 |
| Digitaria exilis | Dexi_CM05836_chr09B | 5 | CH_dex_1107 | 3 | 3 | 0.000122555 |
| Digitaria exilis | Dexi_CM05836_chr02B | 5 | CH_dex_654 | 4 | 5 | 0.000000757 |
| Eragrostis curvula | 1 | 5 | CH_ecu_1092 | 3 | 3 | 0.000044198 |
| Eragrostis curvula | 3 | 5 | CH_ecu_365 | 6 | 11 | 0.0000000000144224 |
| Glycine max | Gm01 | 5 | CH_gma_611 | 3 | 3 | 0.0001083 |
| Lolium perenne | Lp_chr4_0 | 5 | CH_lpe_147 | 5 | 8 | 0.000000000486115 |
| Magnolia biondii | Chr12 | 5 | CH_mbi_521 | 5 | 25 | 0.00000109758 |
| Oryza alta | GWHAZTO00000021 | 5 | CH_oal_890 | 3 | 3 | 0.0000178229 |
| Oryza brachyantha | 11 | 5 | CH_obr_331 | 3 | 3 | 0.0000292022 |
| Oryza brachyantha | 9 | 5 | CH_obr_396 | 3 | 4 | 0.000116727 |
| Oryza brachyantha | 9 | 5 | CH_obr_535 | 3 | 6 | 0.000582815 |
| Oryza sativa ssp. indica | Chr11 | 5 | CH_osaindica_524 | 3 | 4 | 0.00011426 |
| Phyllostachys edulis | hic_scaffold_13 | 5 | CH_ped_765 | 3 | 4 | 0.000291226 |
| Populus trichocarpa | Chr07 | 5 | CH_ptr_323 | 4 | 4 | 0.000000156846 |
| Populus trichocarpa | Chr05 | 5 | CH_ptr_711 | 3 | 4 | 0.000442527 |
| Sorghum bicolor | Chr10 | 5 | CH_sbi_149 | 5 | 5 | 0.0000000000387377 |
| Sorghum bicolor | Chr02 | 5 | CH_sbi_261 | 4 | 4 | 0.0000000400137 |
| Secale cereale | GWHASIY00000006 | 5 | CH_sce_317 | 5 | 8 | 0.00000000982621 |
| Secale cereale | GWHASIY00000004 | 5 | CH_sce_619 | 4 | 7 | 0.00000481748 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1952 | 3 | 3 | 0.000121818 |
| Setaria viridis | Chr_09 | 5 | CH_svi_567 | 3 | 3 | 0.0000435354 |
| Triticum aestivum | Chr4B | 5 | CH_tae_2226 | 3 | 3 | 0.000205809 |
| Triticum aestivum | Chr4A | 5 | CH_tae_2227 | 3 | 3 | 0.000205809 |
| Triticum aestivum | Chr4D | 5 | CH_tae_2620 | 3 | 4 | 0.000822473 |
| Triticum dicoccoides | 4A | 5 | CH_tdi_912 | 3 | 3 | 0.000089256 |
| Triticum turgidum | chr4A | 5 | CH_ttu_1002 | 3 | 3 | 0.0000911288 |
| Triticum turgidum | chr4B | 5 | CH_ttu_1003 | 3 | 3 | 0.0000911288 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00039.1 | 5 | CH_zjn_137 | 4 | 7 | 0.000000350615 |
| Zea mays B73 | 7 | 5 | CH_zma_290 | 3 | 3 | 0.0000176281 |
| Allium sativum | chr5 | 6 | CH_asa_1097 | 3 | 4 | 0.000187525 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_387 | 3 | 5 | 0.0000403107 |
| Amborella trichopoda | AmTr_v1.0_scaffold00040 | 6 | CH_atr_209 | 4 | 5 | 0.000000153868 |
| Brachypodium distachyon | Bd4 | 6 | CH_bdi_421 | 3 | 4 | 0.000113098 |
| Cenchrus purpureus | GWHAORA00000176 | 6 | CH_cpu_630 | 5 | 10 | 0.000000116524 |
| Dioscorea dumetorum | contig60 | 6 | CH_ddu_311 | 3 | 4 | 0.000128644 |
| Digitaria exilis | Dexi_CM05836_chr09B | 6 | CH_dex_1107 | 3 | 3 | 0.000122555 |
| Digitaria exilis | Dexi_CM05836_chr02B | 6 | CH_dex_654 | 4 | 5 | 0.000000757 |
| Eragrostis curvula | 1 | 6 | CH_ecu_1092 | 3 | 3 | 0.000044198 |
| Eragrostis curvula | 3 | 6 | CH_ecu_365 | 6 | 11 | 0.0000000000144224 |
| Glycine max | Gm01 | 6 | CH_gma_611 | 3 | 3 | 0.0001083 |
| Lolium perenne | Lp_chr4_0 | 6 | CH_lpe_147 | 5 | 8 | 0.000000000486115 |
| Magnolia biondii | Chr12 | 6 | CH_mbi_521 | 5 | 25 | 0.00000109758 |
| Oryza alta | GWHAZTO00000021 | 6 | CH_oal_890 | 3 | 3 | 0.0000178229 |
| Oryza brachyantha | 11 | 6 | CH_obr_331 | 3 | 3 | 0.0000292022 |
| Oryza brachyantha | 9 | 6 | CH_obr_396 | 3 | 4 | 0.000116727 |
| Oryza brachyantha | 9 | 6 | CH_obr_535 | 3 | 6 | 0.000582815 |
| Oryza sativa ssp. indica | Chr11 | 6 | CH_osaindica_524 | 3 | 4 | 0.00011426 |
| Phyllostachys edulis | hic_scaffold_13 | 6 | CH_ped_765 | 3 | 4 | 0.000291226 |
| Populus trichocarpa | Chr07 | 6 | CH_ptr_323 | 4 | 4 | 0.000000156846 |
| Populus trichocarpa | Chr05 | 6 | CH_ptr_711 | 3 | 4 | 0.000442527 |
| Sorghum bicolor | Chr10 | 6 | CH_sbi_149 | 5 | 5 | 0.0000000000387377 |
| Sorghum bicolor | Chr02 | 6 | CH_sbi_261 | 4 | 4 | 0.0000000400137 |
| Secale cereale | GWHASIY00000006 | 6 | CH_sce_317 | 5 | 8 | 0.00000000982621 |
| Secale cereale | GWHASIY00000004 | 6 | CH_sce_619 | 4 | 7 | 0.00000481748 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1952 | 3 | 3 | 0.000121818 |
| Setaria viridis | Chr_09 | 6 | CH_svi_567 | 3 | 3 | 0.0000435354 |
| Triticum aestivum | Chr4B | 6 | CH_tae_2226 | 3 | 3 | 0.000205809 |
| Triticum aestivum | Chr4A | 6 | CH_tae_2227 | 3 | 3 | 0.000205809 |
| Triticum aestivum | Chr4D | 6 | CH_tae_2620 | 3 | 4 | 0.000822473 |
| Triticum dicoccoides | 4A | 6 | CH_tdi_912 | 3 | 3 | 0.000089256 |
| Triticum turgidum | chr4A | 6 | CH_ttu_1002 | 3 | 3 | 0.0000911288 |
| Triticum turgidum | chr4B | 6 | CH_ttu_1003 | 3 | 3 | 0.0000911288 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00039.1 | 6 | CH_zjn_137 | 4 | 7 | 0.000000350615 |
| Zea mays B73 | 7 | 6 | CH_zma_290 | 3 | 3 | 0.0000176281 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |