Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of biological quality

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Magnolia biondii Chr18 3 CH_mbi_480 7 14 0.000113993
Oropetium thomaeum Chromosome_2 3 CH_oth_136 12 49 0.0000957105
Sequoiadendron giganteum chr11 3 CH_sgi_697 16 77 0.000000529996
Solanum lycopersicum SL4.0ch01 3 CH_sly_523 8 22 0.000596291
Saccharum spontaneum Chr8C 3 CH_ssp_833 13 60 0.000285605
Magnolia biondii Chr18 4 CH_mbi_480 7 14 0.000113993
Oropetium thomaeum Chromosome_2 4 CH_oth_136 12 49 0.0000957105
Sequoiadendron giganteum chr11 4 CH_sgi_697 16 77 0.000000529996
Solanum lycopersicum SL4.0ch01 4 CH_sly_523 8 22 0.000596291
Saccharum spontaneum Chr8C 4 CH_ssp_833 13 60 0.000285605

Available child term results

Ontology identifier Description Number of clusters
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0006450 regulation of translational fidelity 2
GO:0006873 cellular ion homeostasis 2
GO:0006876 cellular cadmium ion homeostasis 2
GO:0006878 cellular copper ion homeostasis 2
GO:0006880 intracellular sequestering of iron ion 14
GO:0007035 vacuolar acidification 2
GO:0007204 positive regulation of cytosolic calcium ion concentration 2
GO:0008360 regulation of cell shape 2
GO:0009691 cytokinin biosynthetic process 2
GO:0009823 cytokinin catabolic process 16
GO:0009850 auxin metabolic process 2
GO:0009852 auxin catabolic process 14
GO:0009992 cellular water homeostasis 12
GO:0010184 cytokinin transport 68
GO:0010268 brassinosteroid homeostasis 6
GO:0010315 auxin efflux 2
GO:0010422 regulation of brassinosteroid biosynthetic process 12
GO:0010423 negative regulation of brassinosteroid biosynthetic process 2
GO:0010540 basipetal auxin transport 2
GO:0010541 acropetal auxin transport 8
GO:0010601 positive regulation of auxin biosynthetic process 2
GO:0010617 circadian regulation of calcium ion oscillation 4
GO:0010960 magnesium ion homeostasis 14
GO:0016131 brassinosteroid metabolic process 2
GO:0017121 plasma membrane phospholipid scrambling 4
GO:0030026 cellular manganese ion homeostasis 16
GO:0030643 cellular phosphate ion homeostasis 32
GO:0030644 cellular chloride ion homeostasis 4
GO:0030833 regulation of actin filament polymerization 10
GO:0032469 endoplasmic reticulum calcium ion homeostasis 2
GO:0032535 regulation of cellular component size 2
GO:0033214 siderophore-dependent iron import into cell 10
GO:0033466 trans-zeatin biosynthetic process 2
GO:0033500 carbohydrate homeostasis 2
GO:0034314 Arp2/3 complex-mediated actin nucleation 2
GO:0042391 regulation of membrane potential 14
GO:0042592 homeostatic process 2
GO:0042989 sequestering of actin monomers 4
GO:0043488 regulation of mRNA stability 2
GO:0045454 cell redox homeostasis 4
GO:0045793 positive regulation of cell size 6
GO:0045851 pH reduction 2
GO:0046719 regulation by virus of viral protein levels in host cell 2
GO:0048255 mRNA stabilization 2
GO:0050821 protein stabilization 8
GO:0050891 multicellular organismal water homeostasis 4
GO:0051016 barbed-end actin filament capping 2
GO:0051127 positive regulation of actin nucleation 4
GO:0051208 sequestering of calcium ion 2
GO:0051453 regulation of intracellular pH 14
GO:0051560 mitochondrial calcium ion homeostasis 2
GO:0051562 negative regulation of mitochondrial calcium ion concentration 2
GO:0055068 cobalt ion homeostasis 4
GO:0055069 zinc ion homeostasis 24
GO:0055072 iron ion homeostasis 2
GO:0055073 cadmium ion homeostasis 28
GO:0055075 potassium ion homeostasis 14
GO:0055082 cellular chemical homeostasis 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0060250 germ-line stem-cell niche homeostasis 2
GO:0060919 auxin influx 6
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0070328 triglyceride homeostasis 2
GO:0080024 indolebutyric acid metabolic process 4
GO:0080144 amino acid homeostasis 2
GO:0080145 cysteine homeostasis 16
GO:0080162 intracellular auxin transport 30
GO:0090356 negative regulation of auxin metabolic process 2
GO:0097275 cellular ammonium homeostasis 2
GO:0097298 regulation of nucleus size 2
GO:0098711 iron ion import across plasma membrane 2
GO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 6
GO:1902265 abscisic acid homeostasis 4
GO:2000012 regulation of auxin polar transport 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001