Functional clusters
Information
- Type Gene Ontology
- Description hydroxycinnamoyltransferase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr1 | 3 | CH_asa_312 | 3 | 3 | 0.00000256821 |
| Allium sativum | chr7_1 | 3 | CH_asa_613 | 3 | 9 | 0.000215385 |
| Aegilops tauschii | 4D | 3 | CH_ata_138 | 4 | 7 | 0.000000343044 |
| Aegilops tauschii | 5D | 3 | CH_ata_38 | 6 | 11 | 0.00000000000178264 |
| Aegilops tauschii | 2D | 3 | CH_ata_409 | 3 | 8 | 0.000824794 |
| Amborella trichopoda | AmTr_v1.0_scaffold00058 | 3 | CH_atr_142 | 3 | 3 | 0.00000344585 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 3 | CH_atr_29 | 6 | 8 | 0.0000000000000059843 |
| Brachypodium distachyon | Bd4 | 3 | CH_bdi_180 | 3 | 5 | 0.0000387631 |
| Brachypodium distachyon | Bd1 | 3 | CH_bdi_36 | 5 | 5 | 0.000000000000671301 |
| Ceratophyllum demersum | 12 | 3 | CH_cde_12 | 5 | 6 | 0.0000000000149986 |
| Ceratophyllum demersum | 11 | 3 | CH_cde_71 | 3 | 3 | 0.00000763534 |
| Ceratophyllum demersum | 4 | 3 | CH_cde_99 | 3 | 5 | 0.0000762795 |
| Dioscorea dumetorum | contig3 | 3 | CH_ddu_40 | 6 | 9 | 0.0000000000000806499 |
| Dioscorea dumetorum | contig395 | 3 | CH_ddu_54 | 5 | 7 | 0.0000000000417005 |
| Eragrostis curvula | Contig816 | 3 | CH_ecu_18 | 14 | 31 | 6.62624e-32 |
| Eragrostis curvula | 1 | 3 | CH_ecu_275 | 5 | 12 | 0.0000000113714 |
| Eragrostis curvula | 2 | 3 | CH_ecu_32 | 12 | 32 | 1.72101e-25 |
| Eragrostis curvula | 3 | 3 | CH_ecu_422 | 4 | 8 | 0.0000013668 |
| Hordeum vulgare | chr4H | 3 | CH_hvu_149 | 4 | 7 | 0.0000000620908 |
| Hordeum vulgare | chr5H | 3 | CH_hvu_194 | 4 | 13 | 0.00000126593 |
| Lolium perenne | Lp_chr5_0 | 3 | CH_lpe_155 | 4 | 18 | 0.000000304548 |
| Musa acuminata | chr08 | 3 | CH_mac_27 | 5 | 6 | 0.00000000000140824 |
| Magnolia biondii | Chr04 | 3 | CH_mbi_387 | 3 | 8 | 0.0000237579 |
| Phyllostachys edulis | hic_scaffold_13 | 3 | CH_ped_270 | 3 | 5 | 0.0000203112 |
| Secale cereale | GWHASIY00000001 | 3 | CH_sce_218 | 4 | 5 | 0.00000011637 |
| Secale cereale | GWHASIY00000007 | 3 | CH_sce_244 | 4 | 6 | 0.000000348879 |
| Secale cereale | GWHASIY00000002 | 3 | CH_sce_825 | 3 | 7 | 0.000992059 |
| Secale cereale | GWHASIY00000005 | 3 | CH_sce_99 | 6 | 14 | 0.0000000000429071 |
| Sequoiadendron giganteum | chr11 | 3 | CH_sgi_700 | 3 | 3 | 0.000000587373 |
| Solanum lycopersicum | SL4.0ch11 | 3 | CH_sly_511 | 2 | 2 | 0.000586941 |
| Saccharum spontaneum | Chr2B | 3 | CH_ssp_405 | 3 | 3 | 0.00000465879 |
| Saccharum spontaneum | Chr2D | 3 | CH_ssp_406 | 3 | 3 | 0.00000465879 |
| Triticum aestivum | Chr4D | 3 | CH_tae_1160 | 3 | 5 | 0.000218508 |
| Triticum aestivum | Chr5B | 3 | CH_tae_201 | 6 | 9 | 0.000000000000324171 |
| Triticum aestivum | Chr5A | 3 | CH_tae_251 | 6 | 13 | 0.00000000000660979 |
| Triticum aestivum | Chr5D | 3 | CH_tae_326 | 5 | 8 | 0.000000000391612 |
| Triticum aestivum | Chr4B | 3 | CH_tae_440 | 4 | 4 | 0.0000000124782 |
| Triticum aestivum | Chr4A | 3 | CH_tae_566 | 4 | 6 | 0.000000187001 |
| Triticum aestivum | Chr1B | 3 | CH_tae_923 | 3 | 3 | 0.0000218699 |
| Triticum dicoccoides | 5A | 3 | CH_tdi_223 | 4 | 12 | 0.000000490378 |
| Triticum dicoccoides | 1B | 3 | CH_tdi_328 | 3 | 4 | 0.0000121576 |
| Triticum dicoccoides | 5B | 3 | CH_tdi_363 | 3 | 5 | 0.0000303861 |
| Triticum turgidum | chr5B | 3 | CH_ttu_175 | 4 | 4 | 0.00000000424744 |
| Triticum turgidum | chr4B | 3 | CH_ttu_396 | 3 | 3 | 0.00000876768 |
| Triticum turgidum | chr5A | 3 | CH_ttu_649 | 3 | 8 | 0.00049006 |
| Triticum turgidum | chr2B | 3 | CH_ttu_698 | 3 | 9 | 0.000734812 |
| Zea mays B73 | 4 | 3 | CH_zma_131 | 3 | 3 | 0.00000178438 |
| Allium sativum | chr1 | 4 | CH_asa_312 | 3 | 3 | 0.00000256821 |
| Allium sativum | chr7_1 | 4 | CH_asa_613 | 3 | 9 | 0.000215385 |
| Aegilops tauschii | 4D | 4 | CH_ata_138 | 4 | 7 | 0.000000343044 |
| Aegilops tauschii | 5D | 4 | CH_ata_38 | 6 | 11 | 0.00000000000178264 |
| Aegilops tauschii | 2D | 4 | CH_ata_409 | 3 | 8 | 0.000824794 |
| Amborella trichopoda | AmTr_v1.0_scaffold00058 | 4 | CH_atr_142 | 3 | 3 | 0.00000344585 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 4 | CH_atr_29 | 6 | 8 | 0.0000000000000059843 |
| Brachypodium distachyon | Bd4 | 4 | CH_bdi_180 | 3 | 5 | 0.0000387631 |
| Brachypodium distachyon | Bd1 | 4 | CH_bdi_36 | 5 | 5 | 0.000000000000671301 |
| Ceratophyllum demersum | 12 | 4 | CH_cde_12 | 5 | 6 | 0.0000000000149986 |
| Ceratophyllum demersum | 11 | 4 | CH_cde_71 | 3 | 3 | 0.00000763534 |
| Ceratophyllum demersum | 4 | 4 | CH_cde_99 | 3 | 5 | 0.0000762795 |
| Dioscorea dumetorum | contig3 | 4 | CH_ddu_40 | 6 | 9 | 0.0000000000000806499 |
| Dioscorea dumetorum | contig395 | 4 | CH_ddu_54 | 5 | 7 | 0.0000000000417005 |
| Eragrostis curvula | Contig816 | 4 | CH_ecu_18 | 14 | 31 | 6.62624e-32 |
| Eragrostis curvula | 1 | 4 | CH_ecu_275 | 5 | 12 | 0.0000000113714 |
| Eragrostis curvula | 2 | 4 | CH_ecu_32 | 12 | 32 | 1.72101e-25 |
| Eragrostis curvula | 3 | 4 | CH_ecu_422 | 4 | 8 | 0.0000013668 |
| Hordeum vulgare | chr4H | 4 | CH_hvu_149 | 4 | 7 | 0.0000000620908 |
| Hordeum vulgare | chr5H | 4 | CH_hvu_194 | 4 | 13 | 0.00000126593 |
| Lolium perenne | Lp_chr5_0 | 4 | CH_lpe_155 | 4 | 18 | 0.000000304548 |
| Musa acuminata | chr08 | 4 | CH_mac_27 | 5 | 6 | 0.00000000000140824 |
| Magnolia biondii | Chr04 | 4 | CH_mbi_387 | 3 | 8 | 0.0000237579 |
| Phyllostachys edulis | hic_scaffold_13 | 4 | CH_ped_270 | 3 | 5 | 0.0000203112 |
| Secale cereale | GWHASIY00000001 | 4 | CH_sce_218 | 4 | 5 | 0.00000011637 |
| Secale cereale | GWHASIY00000007 | 4 | CH_sce_244 | 4 | 6 | 0.000000348879 |
| Secale cereale | GWHASIY00000002 | 4 | CH_sce_825 | 3 | 7 | 0.000992059 |
| Secale cereale | GWHASIY00000005 | 4 | CH_sce_99 | 6 | 14 | 0.0000000000429071 |
| Sequoiadendron giganteum | chr11 | 4 | CH_sgi_700 | 3 | 3 | 0.000000587373 |
| Solanum lycopersicum | SL4.0ch11 | 4 | CH_sly_511 | 2 | 2 | 0.000586941 |
| Saccharum spontaneum | Chr2B | 4 | CH_ssp_405 | 3 | 3 | 0.00000465879 |
| Saccharum spontaneum | Chr2D | 4 | CH_ssp_406 | 3 | 3 | 0.00000465879 |
| Triticum aestivum | Chr4D | 4 | CH_tae_1160 | 3 | 5 | 0.000218508 |
| Triticum aestivum | Chr5B | 4 | CH_tae_201 | 6 | 9 | 0.000000000000324171 |
| Triticum aestivum | Chr5A | 4 | CH_tae_251 | 6 | 13 | 0.00000000000660979 |
| Triticum aestivum | Chr5D | 4 | CH_tae_326 | 5 | 8 | 0.000000000391612 |
| Triticum aestivum | Chr4B | 4 | CH_tae_440 | 4 | 4 | 0.0000000124782 |
| Triticum aestivum | Chr4A | 4 | CH_tae_566 | 4 | 6 | 0.000000187001 |
| Triticum aestivum | Chr1B | 4 | CH_tae_923 | 3 | 3 | 0.0000218699 |
| Triticum dicoccoides | 5A | 4 | CH_tdi_223 | 4 | 12 | 0.000000490378 |
| Triticum dicoccoides | 1B | 4 | CH_tdi_328 | 3 | 4 | 0.0000121576 |
| Triticum dicoccoides | 5B | 4 | CH_tdi_363 | 3 | 5 | 0.0000303861 |
| Triticum turgidum | chr5B | 4 | CH_ttu_175 | 4 | 4 | 0.00000000424744 |
| Triticum turgidum | chr4B | 4 | CH_ttu_396 | 3 | 3 | 0.00000876768 |
| Triticum turgidum | chr5A | 4 | CH_ttu_649 | 3 | 8 | 0.00049006 |
| Triticum turgidum | chr2B | 4 | CH_ttu_698 | 3 | 9 | 0.000734812 |
| Zea mays B73 | 4 | 4 | CH_zma_131 | 3 | 3 | 0.00000178438 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |