Functional clusters
Information
- Type Gene Ontology
- Description T/G mismatch-specific endonuclease activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr4 | 3 | CH_ath_215 | 3 | 6 | 0.00000024621 |
| Calamus simplicifolius | scaffold406 | 3 | CH_calsi_257 | 2 | 2 | 0.000402793 |
| Calamus simplicifolius | scaffold1290 | 3 | CH_calsi_258 | 2 | 2 | 0.000402793 |
| Hordeum vulgare | chr2H | 3 | CH_hvu_53 | 5 | 13 | 0.00000000000146567 |
| Oryza alta | GWHAZTO00000013 | 3 | CH_oal_708 | 2 | 2 | 0.000564237 |
| Oryza brachyantha | 1 | 3 | CH_obr_274 | 2 | 2 | 0.000358402 |
| Oryza sativa ssp. japonica | chr01 | 3 | CH_osa_372 | 2 | 3 | 0.000316874 |
| Phyllostachys edulis | hic_scaffold_14 | 3 | CH_ped_465 | 2 | 2 | 0.000611185 |
| Panicum hallii | Chr07 | 3 | CH_pha_396 | 2 | 2 | 0.000581108 |
| Populus trichocarpa | Chr11 | 3 | CH_ptr_383 | 2 | 2 | 0.0001734 |
| Sorghum bicolor | Chr06 | 3 | CH_sbi_424 | 2 | 2 | 0.000586682 |
| Secale cereale | GWHASIY00000002 | 3 | CH_sce_92 | 5 | 12 | 0.0000000000201954 |
| Solanum lycopersicum | SL4.0ch02 | 3 | CH_sly_409 | 2 | 2 | 0.000176082 |
| Setaria viridis | Chr_05 | 3 | CH_svi_408 | 2 | 2 | 0.000313071 |
| Triticum aestivum | Chr2A | 3 | CH_tae_203 | 5 | 6 | 0.000000000000362441 |
| Triticum aestivum | Chr2D | 3 | CH_tae_243 | 5 | 8 | 0.00000000000338161 |
| Triticum aestivum | Chr2B | 3 | CH_tae_397 | 4 | 6 | 0.00000000440252 |
| Triticum aestivum | Chr3A | 3 | CH_tae_707 | 3 | 3 | 0.00000136477 |
| Triticum aestivum | Chr3B | 3 | CH_tae_708 | 3 | 3 | 0.00000136477 |
| Triticum aestivum | Chr3D | 3 | CH_tae_709 | 3 | 3 | 0.00000136477 |
| Arabidopsis thaliana | Chr4 | 4 | CH_ath_215 | 3 | 6 | 0.00000024621 |
| Calamus simplicifolius | scaffold406 | 4 | CH_calsi_257 | 2 | 2 | 0.000402793 |
| Calamus simplicifolius | scaffold1290 | 4 | CH_calsi_258 | 2 | 2 | 0.000402793 |
| Hordeum vulgare | chr2H | 4 | CH_hvu_53 | 5 | 13 | 0.00000000000146567 |
| Oryza alta | GWHAZTO00000013 | 4 | CH_oal_708 | 2 | 2 | 0.000564237 |
| Oryza brachyantha | 1 | 4 | CH_obr_274 | 2 | 2 | 0.000358402 |
| Oryza sativa ssp. japonica | chr01 | 4 | CH_osa_372 | 2 | 3 | 0.000316874 |
| Phyllostachys edulis | hic_scaffold_14 | 4 | CH_ped_465 | 2 | 2 | 0.000611185 |
| Panicum hallii | Chr07 | 4 | CH_pha_396 | 2 | 2 | 0.000581108 |
| Populus trichocarpa | Chr11 | 4 | CH_ptr_383 | 2 | 2 | 0.0001734 |
| Sorghum bicolor | Chr06 | 4 | CH_sbi_424 | 2 | 2 | 0.000586682 |
| Secale cereale | GWHASIY00000002 | 4 | CH_sce_92 | 5 | 12 | 0.0000000000201954 |
| Solanum lycopersicum | SL4.0ch02 | 4 | CH_sly_409 | 2 | 2 | 0.000176082 |
| Setaria viridis | Chr_05 | 4 | CH_svi_408 | 2 | 2 | 0.000313071 |
| Triticum aestivum | Chr2A | 4 | CH_tae_203 | 5 | 6 | 0.000000000000362441 |
| Triticum aestivum | Chr2D | 4 | CH_tae_243 | 5 | 8 | 0.00000000000338161 |
| Triticum aestivum | Chr2B | 4 | CH_tae_397 | 4 | 6 | 0.00000000440252 |
| Triticum aestivum | Chr3A | 4 | CH_tae_707 | 3 | 3 | 0.00000136477 |
| Triticum aestivum | Chr3B | 4 | CH_tae_708 | 3 | 3 | 0.00000136477 |
| Triticum aestivum | Chr3D | 4 | CH_tae_709 | 3 | 3 | 0.00000136477 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |