Functional clusters

Information

  • Type Gene Ontology
  • Description photosynthetic membrane

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG21 3 CH_aco_53 7 12 0.00000378575
Asparagus officinalis AsparagusV1_02 3 CH_aof_157 7 26 0.000736572
Brachypodium distachyon Bd2 3 CH_bdi_156 5 5 0.0000164971
Brachypodium distachyon Bd5 3 CH_bdi_26 13 21 0.00000000000000364971
Brachypodium distachyon Bd3 3 CH_bdi_41 12 27 0.0000000000210899
Solanum lycopersicum SL4.0ch00 3 CH_sly_16 23 57 2.84026e-24
Triticum aestivum Chr1D 3 CH_tae_14 24 33 3.37395e-33
Ananas comosus LG21 4 CH_aco_53 7 12 0.00000378575
Asparagus officinalis AsparagusV1_02 4 CH_aof_157 7 26 0.000736572
Brachypodium distachyon Bd2 4 CH_bdi_156 5 5 0.0000164971
Brachypodium distachyon Bd5 4 CH_bdi_26 13 21 0.00000000000000364971
Brachypodium distachyon Bd3 4 CH_bdi_41 12 27 0.0000000000210899
Solanum lycopersicum SL4.0ch00 4 CH_sly_16 23 57 2.84026e-24
Triticum aestivum Chr1D 4 CH_tae_14 24 33 3.37395e-33

Available child term results

Ontology identifier Description Number of clusters
GO:0009503 thylakoid light-harvesting complex 4
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009521 photosystem 18
GO:0009523 photosystem II 16
GO:0009535 chloroplast thylakoid membrane 6
GO:0009538 photosystem I reaction center 2
GO:0009539 photosystem II reaction center 14
GO:0009544 chloroplast ATP synthase complex 4
GO:0009654 photosystem II oxygen evolving complex 8
GO:0009782 photosystem I antenna complex 2
GO:0009783 photosystem II antenna complex 2
GO:0030093 chloroplast photosystem I 4
GO:0035451 extrinsic component of stromal side of plastid thylakoid membrane 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001