Functional clusters
Information
- Type Gene Ontology
- Description pectinesterase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 3 | CH_aag_46 | 6 | 45 | 0.0000000601396 |
| Ananas comosus | LG02 | 3 | CH_aco_13 | 7 | 24 | 0.000000000234331 |
| Asparagus officinalis | AsparagusV1_03 | 3 | CH_aof_13 | 5 | 6 | 0.00000000560442 |
| Asparagus officinalis | AsparagusV1_06 | 3 | CH_aof_25 | 6 | 19 | 0.0000000478946 |
| Asparagus officinalis | AsparagusV1_04 | 3 | CH_aof_7 | 6 | 8 | 0.0000000000503373 |
| Allium sativum | chr8 | 3 | CH_asa_72 | 9 | 26 | 0.00000000000228397 |
| Allium sativum | chr2 | 3 | CH_asa_786 | 6 | 53 | 0.00067474 |
| Aegilops tauschii | 2D | 3 | CH_ata_124 | 4 | 5 | 0.000000132119 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_566 | 5 | 45 | 0.000275385 |
| Amborella trichopoda | AmTr_v1.0_scaffold00129 | 3 | CH_atr_21 | 11 | 39 | 1.4239e-17 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 3 | CH_atr_239 | 3 | 3 | 0.000163735 |
| Calamus simplicifolius | scaffold90 | 3 | CH_calsi_212 | 3 | 3 | 0.000116926 |
| Calamus simplicifolius | scaffold157 | 3 | CH_calsi_284 | 3 | 4 | 0.00046716 |
| Chara braunii | BFEA01000238 | 3 | CH_cbr_116 | 3 | 4 | 0.000139423 |
| Ceratophyllum demersum | 3 | 3 | CH_cde_21 | 6 | 9 | 0.000000000756808 |
| Ceratophyllum demersum | 5 | 3 | CH_cde_23 | 7 | 20 | 0.0000000017267 |
| Ceratophyllum demersum | 3 | 3 | CH_cde_96 | 4 | 7 | 0.0000471339 |
| Dioscorea dumetorum | contig540 | 3 | CH_ddu_44 | 6 | 6 | 0.000000000000721333 |
| Digitaria exilis | Dexi_CM05836_chr05A | 3 | CH_dex_511 | 3 | 3 | 0.000165479 |
| Elaeis guineensis | EG5.1_Chr15 | 3 | CH_egu_183 | 3 | 3 | 0.000178292 |
| Elaeis guineensis | EG5.1_Chr14 | 3 | CH_egu_273 | 3 | 4 | 0.000712096 |
| Glycine max | Gm15 | 3 | CH_gma_153 | 5 | 6 | 0.0000000185338 |
| Glycine max | Gm09 | 3 | CH_gma_193 | 5 | 8 | 0.000000172342 |
| Glycine max | Gm17 | 3 | CH_gma_548 | 3 | 3 | 0.000622323 |
| Glycine max | Gm19 | 3 | CH_gma_549 | 3 | 3 | 0.000622323 |
| Hordeum vulgare | chr4H | 3 | CH_hvu_261 | 3 | 3 | 0.0000208419 |
| Musa acuminata | chr09 | 3 | CH_mac_287 | 3 | 4 | 0.000885174 |
| Musa acuminata | chr03 | 3 | CH_mac_69 | 4 | 4 | 0.000000396631 |
| Musa acuminata | chr08 | 3 | CH_mac_87 | 4 | 5 | 0.0000019803 |
| Magnolia biondii | Chr19 | 3 | CH_mbi_161 | 7 | 48 | 0.0000000168968 |
| Phyllostachys edulis | hic_scaffold_22 | 3 | CH_ped_54 | 6 | 6 | 0.000000000000331385 |
| Physcomitrium patens | Chr05 | 3 | CH_ppa_83 | 4 | 11 | 0.0000439743 |
| Populus trichocarpa | Chr01 | 3 | CH_ptr_243 | 4 | 4 | 0.000000704178 |
| Secale cereale | GWHASIY00000002 | 3 | CH_sce_376 | 4 | 10 | 0.00000881864 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_25 | 17 | 24 | 1.79355e-35 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_645 | 5 | 8 | 0.000000195871 |
| Sequoiadendron giganteum | chr7 | 3 | CH_sgi_692 | 5 | 9 | 0.000000439832 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_74 | 12 | 15 | 5.24668e-25 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_749 | 4 | 4 | 0.00000147398 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_833 | 5 | 14 | 0.00000691907 |
| Solanum lycopersicum | SL4.0ch01 | 3 | CH_sly_114 | 5 | 5 | 0.00000000292017 |
| Solanum lycopersicum | SL4.0ch10 | 3 | CH_sly_181 | 5 | 9 | 0.000000365027 |
| Solanum lycopersicum | SL4.0ch01 | 3 | CH_sly_493 | 3 | 3 | 0.000510408 |
| Solanum lycopersicum | SL4.0ch11 | 3 | CH_sly_494 | 3 | 3 | 0.000510408 |
| Selaginella moellendorffii | scaffold_1 | 3 | CH_smo_110 | 3 | 4 | 0.0000805015 |
| Spirodela polyrhiza | pseudo0 | 3 | CH_spo_37 | 6 | 9 | 0.0000000000278635 |
| Triticum aestivum | Chr2B | 3 | CH_tae_150 | 7 | 9 | 0.00000000000000531399 |
| Triticum aestivum | Chr2D | 3 | CH_tae_246 | 6 | 8 | 0.0000000000040539 |
| Triticum dicoccoides | 2A | 3 | CH_tdi_415 | 3 | 3 | 0.0000788335 |
| Triticum turgidum | chr2B | 3 | CH_ttu_117 | 5 | 5 | 0.0000000000463088 |
| Vanilla planifolia | CM028153.1 | 3 | CH_vpl_335 | 3 | 3 | 0.000575719 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00015.1 | 3 | CH_zjn_174 | 3 | 4 | 0.000171032 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00012.1 | 3 | CH_zjn_175 | 3 | 4 | 0.000171032 |
| Zea mays B104 | scaffold4.185 | 3 | CH_zma-b104_1 | 16 | 20 | 1.15972e-36 |
| Zea mays B73 | 5 | 3 | CH_zma_49 | 5 | 6 | 0.00000000088187 |
| Zostera marina | Chr04 | 3 | CH_zosmarina_13 | 8 | 21 | 0.0000000000215262 |
| Zostera marina | Chr02 | 3 | CH_zosmarina_167 | 3 | 3 | 0.000582703 |
| Zostera marina | Chr01 | 3 | CH_zosmarina_168 | 3 | 3 | 0.000582703 |
| Zostera marina | Chr02 | 3 | CH_zosmarina_25 | 5 | 5 | 0.00000000497218 |
| Anthoceros agrestis | Sc2ySwM_228 | 4 | CH_aag_46 | 6 | 45 | 0.0000000601396 |
| Ananas comosus | LG02 | 4 | CH_aco_13 | 7 | 24 | 0.000000000234331 |
| Asparagus officinalis | AsparagusV1_03 | 4 | CH_aof_13 | 5 | 6 | 0.00000000560442 |
| Asparagus officinalis | AsparagusV1_06 | 4 | CH_aof_25 | 6 | 19 | 0.0000000478946 |
| Asparagus officinalis | AsparagusV1_04 | 4 | CH_aof_7 | 6 | 8 | 0.0000000000503373 |
| Allium sativum | chr8 | 4 | CH_asa_72 | 9 | 26 | 0.00000000000228397 |
| Allium sativum | chr2 | 4 | CH_asa_786 | 6 | 53 | 0.00067474 |
| Aegilops tauschii | 2D | 4 | CH_ata_124 | 4 | 5 | 0.000000132119 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_566 | 5 | 45 | 0.000275385 |
| Amborella trichopoda | AmTr_v1.0_scaffold00129 | 4 | CH_atr_21 | 11 | 39 | 1.4239e-17 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 4 | CH_atr_239 | 3 | 3 | 0.000163735 |
| Calamus simplicifolius | scaffold90 | 4 | CH_calsi_212 | 3 | 3 | 0.000116926 |
| Calamus simplicifolius | scaffold157 | 4 | CH_calsi_284 | 3 | 4 | 0.00046716 |
| Chara braunii | BFEA01000238 | 4 | CH_cbr_116 | 3 | 4 | 0.000139423 |
| Ceratophyllum demersum | 3 | 4 | CH_cde_21 | 6 | 9 | 0.000000000756808 |
| Ceratophyllum demersum | 5 | 4 | CH_cde_23 | 7 | 20 | 0.0000000017267 |
| Ceratophyllum demersum | 3 | 4 | CH_cde_96 | 4 | 7 | 0.0000471339 |
| Dioscorea dumetorum | contig540 | 4 | CH_ddu_44 | 6 | 6 | 0.000000000000721333 |
| Digitaria exilis | Dexi_CM05836_chr05A | 4 | CH_dex_511 | 3 | 3 | 0.000165479 |
| Elaeis guineensis | EG5.1_Chr15 | 4 | CH_egu_183 | 3 | 3 | 0.000178292 |
| Elaeis guineensis | EG5.1_Chr14 | 4 | CH_egu_273 | 3 | 4 | 0.000712096 |
| Glycine max | Gm15 | 4 | CH_gma_153 | 5 | 6 | 0.0000000185338 |
| Glycine max | Gm09 | 4 | CH_gma_193 | 5 | 8 | 0.000000172342 |
| Glycine max | Gm17 | 4 | CH_gma_548 | 3 | 3 | 0.000622323 |
| Glycine max | Gm19 | 4 | CH_gma_549 | 3 | 3 | 0.000622323 |
| Hordeum vulgare | chr4H | 4 | CH_hvu_261 | 3 | 3 | 0.0000208419 |
| Musa acuminata | chr09 | 4 | CH_mac_287 | 3 | 4 | 0.000885174 |
| Musa acuminata | chr03 | 4 | CH_mac_69 | 4 | 4 | 0.000000396631 |
| Musa acuminata | chr08 | 4 | CH_mac_87 | 4 | 5 | 0.0000019803 |
| Magnolia biondii | Chr19 | 4 | CH_mbi_161 | 7 | 48 | 0.0000000168968 |
| Phyllostachys edulis | hic_scaffold_22 | 4 | CH_ped_54 | 6 | 6 | 0.000000000000331385 |
| Physcomitrium patens | Chr05 | 4 | CH_ppa_83 | 4 | 11 | 0.0000439743 |
| Populus trichocarpa | Chr01 | 4 | CH_ptr_243 | 4 | 4 | 0.000000704178 |
| Secale cereale | GWHASIY00000002 | 4 | CH_sce_376 | 4 | 10 | 0.00000881864 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_25 | 17 | 24 | 1.79355e-35 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_645 | 5 | 8 | 0.000000195871 |
| Sequoiadendron giganteum | chr7 | 4 | CH_sgi_692 | 5 | 9 | 0.000000439832 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_74 | 12 | 15 | 5.24668e-25 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_749 | 4 | 4 | 0.00000147398 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_833 | 5 | 14 | 0.00000691907 |
| Solanum lycopersicum | SL4.0ch01 | 4 | CH_sly_114 | 5 | 5 | 0.00000000292017 |
| Solanum lycopersicum | SL4.0ch10 | 4 | CH_sly_181 | 5 | 9 | 0.000000365027 |
| Solanum lycopersicum | SL4.0ch01 | 4 | CH_sly_493 | 3 | 3 | 0.000510408 |
| Solanum lycopersicum | SL4.0ch11 | 4 | CH_sly_494 | 3 | 3 | 0.000510408 |
| Selaginella moellendorffii | scaffold_1 | 4 | CH_smo_110 | 3 | 4 | 0.0000805015 |
| Spirodela polyrhiza | pseudo0 | 4 | CH_spo_37 | 6 | 9 | 0.0000000000278635 |
| Triticum aestivum | Chr2B | 4 | CH_tae_150 | 7 | 9 | 0.00000000000000531399 |
| Triticum aestivum | Chr2D | 4 | CH_tae_246 | 6 | 8 | 0.0000000000040539 |
| Triticum dicoccoides | 2A | 4 | CH_tdi_415 | 3 | 3 | 0.0000788335 |
| Triticum turgidum | chr2B | 4 | CH_ttu_117 | 5 | 5 | 0.0000000000463088 |
| Vanilla planifolia | CM028153.1 | 4 | CH_vpl_335 | 3 | 3 | 0.000575719 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00015.1 | 4 | CH_zjn_174 | 3 | 4 | 0.000171032 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00012.1 | 4 | CH_zjn_175 | 3 | 4 | 0.000171032 |
| Zea mays B104 | scaffold4.185 | 4 | CH_zma-b104_1 | 16 | 20 | 1.15972e-36 |
| Zea mays B73 | 5 | 4 | CH_zma_49 | 5 | 6 | 0.00000000088187 |
| Zostera marina | Chr04 | 4 | CH_zosmarina_13 | 8 | 21 | 0.0000000000215262 |
| Zostera marina | Chr02 | 4 | CH_zosmarina_167 | 3 | 3 | 0.000582703 |
| Zostera marina | Chr01 | 4 | CH_zosmarina_168 | 3 | 3 | 0.000582703 |
| Zostera marina | Chr02 | 4 | CH_zosmarina_25 | 5 | 5 | 0.00000000497218 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |