Functional clusters
Information
- Type Gene Ontology
- Description RNA-directed 5'-3' RNA polymerase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 3 | CH_aag_28 | 4 | 4 | 0.00000000110898 |
| Ananas comosus | LG20 | 3 | CH_aco_56 | 3 | 5 | 0.00000722079 |
| Ceratophyllum demersum | 3 | 3 | CH_cde_43 | 3 | 3 | 0.000000327496 |
| Cenchrus purpureus | GWHAORA00000008 | 3 | CH_cpu_361 | 3 | 3 | 0.00000080277 |
| Dioscorea dumetorum | contig544 | 3 | CH_ddu_218 | 2 | 2 | 0.000414536 |
| Digitaria exilis | Dexi_CM05836_chr07A | 3 | CH_dex_299 | 3 | 3 | 0.00000162346 |
| Magnolia biondii | Chr19 | 3 | CH_mbi_22 | 8 | 18 | 6.13491e-19 |
| Magnolia biondii | Chr04 | 3 | CH_mbi_38 | 7 | 11 | 2.64127e-17 |
| Oryza alta | GWHAZTO00000013 | 3 | CH_oal_123 | 4 | 6 | 0.00000000142694 |
| Oryza alta | GWHAZTO00000016 | 3 | CH_oal_258 | 3 | 3 | 0.000000590238 |
| Oryza alta | GWHAZTO00000006 | 3 | CH_oal_94 | 4 | 4 | 0.0000000000951546 |
| Oryza sativa ssp. indica | Chr1 | 3 | CH_osaindica_371 | 2 | 2 | 0.000516609 |
| Oryza sativa Kitaake | Chr1 | 3 | CH_osak_430 | 2 | 2 | 0.000562857 |
| Phyllostachys edulis | hic_scaffold_14 | 3 | CH_ped_464 | 2 | 2 | 0.000611185 |
| Sequoiadendron giganteum | chr11 | 3 | CH_sgi_151 | 8 | 19 | 7.57538e-18 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_285 | 5 | 5 | 0.00000000000142152 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_828 | 3 | 3 | 0.00000630447 |
| Spirodela polyrhiza | pseudo15 | 3 | CH_spo_75 | 3 | 4 | 0.000000623228 |
| Setaria viridis | Chr_07 | 3 | CH_svi_190 | 3 | 3 | 0.000000898478 |
| Setaria viridis | Chr_05 | 3 | CH_svi_240 | 3 | 4 | 0.00000359319 |
| Triticum aestivum | Chr3A | 3 | CH_tae_749 | 3 | 3 | 0.00000260356 |
| Triticum aestivum | Chr7D | 3 | CH_tae_750 | 3 | 3 | 0.00000260356 |
| Triticum dicoccoides | 3A | 3 | CH_tdi_263 | 3 | 3 | 0.00000175802 |
| Triticum turgidum | chr3A | 3 | CH_ttu_348 | 3 | 3 | 0.00000259485 |
| Vanilla planifolia | CM028152.1 | 3 | CH_vpl_312 | 2 | 2 | 0.000443328 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00006.1 | 3 | CH_zjn_236 | 2 | 2 | 0.000555144 |
| Zea mays B73 | 2 | 3 | CH_zma_163 | 3 | 6 | 0.0000129347 |
| Zea mays B73 | 9 | 3 | CH_zma_47 | 4 | 5 | 0.000000000661645 |
| Anthoceros agrestis | Sc2ySwM_117 | 4 | CH_aag_28 | 4 | 4 | 0.00000000110898 |
| Ananas comosus | LG20 | 4 | CH_aco_56 | 3 | 5 | 0.00000722079 |
| Ceratophyllum demersum | 3 | 4 | CH_cde_43 | 3 | 3 | 0.000000327496 |
| Cenchrus purpureus | GWHAORA00000008 | 4 | CH_cpu_361 | 3 | 3 | 0.00000080277 |
| Dioscorea dumetorum | contig544 | 4 | CH_ddu_218 | 2 | 2 | 0.000414536 |
| Digitaria exilis | Dexi_CM05836_chr07A | 4 | CH_dex_299 | 3 | 3 | 0.00000162346 |
| Magnolia biondii | Chr19 | 4 | CH_mbi_22 | 8 | 18 | 6.13491e-19 |
| Magnolia biondii | Chr04 | 4 | CH_mbi_38 | 7 | 11 | 2.64127e-17 |
| Oryza alta | GWHAZTO00000013 | 4 | CH_oal_123 | 4 | 6 | 0.00000000142694 |
| Oryza alta | GWHAZTO00000016 | 4 | CH_oal_258 | 3 | 3 | 0.000000590238 |
| Oryza alta | GWHAZTO00000006 | 4 | CH_oal_94 | 4 | 4 | 0.0000000000951546 |
| Oryza sativa ssp. indica | Chr1 | 4 | CH_osaindica_371 | 2 | 2 | 0.000516609 |
| Oryza sativa Kitaake | Chr1 | 4 | CH_osak_430 | 2 | 2 | 0.000562857 |
| Phyllostachys edulis | hic_scaffold_14 | 4 | CH_ped_464 | 2 | 2 | 0.000611185 |
| Sequoiadendron giganteum | chr11 | 4 | CH_sgi_151 | 8 | 19 | 7.57538e-18 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_285 | 5 | 5 | 0.00000000000142152 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_828 | 3 | 3 | 0.00000630447 |
| Spirodela polyrhiza | pseudo15 | 4 | CH_spo_75 | 3 | 4 | 0.000000623228 |
| Setaria viridis | Chr_07 | 4 | CH_svi_190 | 3 | 3 | 0.000000898478 |
| Setaria viridis | Chr_05 | 4 | CH_svi_240 | 3 | 4 | 0.00000359319 |
| Triticum aestivum | Chr3A | 4 | CH_tae_749 | 3 | 3 | 0.00000260356 |
| Triticum aestivum | Chr7D | 4 | CH_tae_750 | 3 | 3 | 0.00000260356 |
| Triticum dicoccoides | 3A | 4 | CH_tdi_263 | 3 | 3 | 0.00000175802 |
| Triticum turgidum | chr3A | 4 | CH_ttu_348 | 3 | 3 | 0.00000259485 |
| Vanilla planifolia | CM028152.1 | 4 | CH_vpl_312 | 2 | 2 | 0.000443328 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00006.1 | 4 | CH_zjn_236 | 2 | 2 | 0.000555144 |
| Zea mays B73 | 2 | 4 | CH_zma_163 | 3 | 6 | 0.0000129347 |
| Zea mays B73 | 9 | 4 | CH_zma_47 | 4 | 5 | 0.000000000661645 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |