Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.carotenoid biosynthesis.apocarotenoids.class-CCD1 carotenoid cleavage dioxygenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr4 1 CH_asa_843 2 3 0.000697535
Amborella trichopoda AmTr_v1.0_scaffold00022 1 CH_atr_188 2 2 0.0000794407
Brachypodium distachyon Bd4 1 CH_bdi_235 2 3 0.000184997
Oryza alta GWHAZTO00000012 1 CH_oal_735 2 5 0.00060451
Populus trichocarpa Chr01 1 CH_ptr_157 3 3 0.0000000200457
Secale cereale GWHASIY00000005 1 CH_sce_788 2 3 0.000409746
Solanum lycopersicum SL4.0ch01 1 CH_sly_333 2 2 0.0000586941
Triticum aestivum Chr5A 1 CH_tae_729 3 9 0.00000246853
Triticum aestivum Chr5D 1 CH_tae_788 3 11 0.00000484846
Triticum turgidum chr5A 1 CH_ttu_283 3 8 0.000000820345
Allium sativum chr4 2 CH_asa_843 2 3 0.000697535
Amborella trichopoda AmTr_v1.0_scaffold00022 2 CH_atr_188 2 2 0.0000794407
Brachypodium distachyon Bd4 2 CH_bdi_235 2 3 0.000184997
Oryza alta GWHAZTO00000012 2 CH_oal_735 2 5 0.00060451
Populus trichocarpa Chr01 2 CH_ptr_157 3 3 0.0000000200457
Secale cereale GWHASIY00000005 2 CH_sce_788 2 3 0.000409746
Solanum lycopersicum SL4.0ch01 2 CH_sly_333 2 2 0.0000586941
Triticum aestivum Chr5A 2 CH_tae_729 3 9 0.00000246853
Triticum aestivum Chr5D 2 CH_tae_788 3 11 0.00000484846
Triticum turgidum chr5A 2 CH_ttu_283 3 8 0.000000820345

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001