Functional clusters

Information

  • Type MapMan
  • Description Secondary metabolism.terpenoids.isoprenyl diphosphate biosynthesis.farnesyl diphosphate synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ceratophyllum demersum 8 1 CH_cde_197 2 2 0.000236939
Digitaria exilis Dexi_CM05836_chr05A 1 CH_dex_220 3 3 0.00000027644
Eragrostis curvula Contig30 1 CH_ecu_320 3 5 0.000000450943
Oryza alta GWHAZTO00000004 1 CH_oal_826 2 2 0.00090681
Oryza alta GWHAZTO00000007 1 CH_oal_827 2 2 0.00090681
Oryza sativa Kitaake Chr4 1 CH_osak_461 2 2 0.000562857
Oropetium thomaeum Chromosome_6 1 CH_oth_266 2 2 0.000711845
Panicum hallii Chr05 1 CH_pha_133 3 3 0.000000177291
Sequoiadendron giganteum chr3 1 CH_sgi_252 4 4 0.00000000000173426
Solanum lycopersicum SL4.0ch10 1 CH_sly_509 2 3 0.000528221
Vanilla planifolia CM028161.1 1 CH_vpl_196 2 2 0.000073888
Ceratophyllum demersum 8 2 CH_cde_197 2 2 0.000236939
Digitaria exilis Dexi_CM05836_chr05A 2 CH_dex_220 3 3 0.00000027644
Eragrostis curvula Contig30 2 CH_ecu_320 3 5 0.000000450943
Oryza alta GWHAZTO00000004 2 CH_oal_826 2 2 0.00090681
Oryza alta GWHAZTO00000007 2 CH_oal_827 2 2 0.00090681
Oryza sativa Kitaake Chr4 2 CH_osak_461 2 2 0.000562857
Oropetium thomaeum Chromosome_6 2 CH_oth_266 2 2 0.000711845
Panicum hallii Chr05 2 CH_pha_133 3 3 0.000000177291
Sequoiadendron giganteum chr3 2 CH_sgi_252 4 4 0.00000000000173426
Solanum lycopersicum SL4.0ch10 2 CH_sly_509 2 3 0.000528221
Vanilla planifolia CM028161.1 2 CH_vpl_196 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001