Functional clusters

Information

  • Type MapMan
  • Description Coenzyme metabolism.chlorophyll metabolism.chlorophyll catabolism.PAO-phyllobilin pathway.red chlorophyll catabolite reductase (RCCR)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr2 1 CH_asa_526 2 2 0.000116261
Brachypodium distachyon Bd2 1 CH_bdi_195 2 2 0.0000616675
Digitaria exilis Dexi_CM05836_chr09A 1 CH_dex_672 2 3 0.000601541
Eragrostis curvula 1 1 CH_ecu_185 4 14 0.00000000262436
Marchantia polymorpha scaffold_2 1 CH_mpo_103 2 2 0.000331327
Miscanthus sinensis Chr02 1 CH_msi_350 2 3 0.000096595
Oryza alta GWHAZTO00000010 1 CH_oal_509 2 2 0.000120908
Oryza alta GWHAZTO00000022 1 CH_oal_510 2 2 0.000120908
Oryza sativa ssp. indica Chr10 1 CH_osaindica_96 3 6 0.0000000800613
Oryza sativa Kitaake Chr10 1 CH_osak_124 3 3 0.00000000475225
Oryza sativa ssp. japonica chr10 1 CH_osa_78 3 4 0.0000000167348
Panicum hallii Chr09 1 CH_pha_352 2 4 0.000348645
Populus trichocarpa Chr07 1 CH_ptr_136 3 3 0.00000000501143
Secale cereale GWHASIY00000006 1 CH_sce_366 3 9 0.00000522149
Secale cereale GWHASIY00000001 1 CH_sce_895 2 2 0.000682936
Saccharum spontaneum Chr1C 1 CH_ssp_1006 2 2 0.000357884
Saccharum spontaneum Chr1D 1 CH_ssp_1007 2 2 0.000357884
Triticum aestivum Chr6D 1 CH_tae_1343 2 3 0.000561183
Allium sativum chr2 2 CH_asa_526 2 2 0.000116261
Brachypodium distachyon Bd2 2 CH_bdi_195 2 2 0.0000616675
Digitaria exilis Dexi_CM05836_chr09A 2 CH_dex_672 2 3 0.000601541
Eragrostis curvula 1 2 CH_ecu_185 4 14 0.00000000262436
Marchantia polymorpha scaffold_2 2 CH_mpo_103 2 2 0.000331327
Miscanthus sinensis Chr02 2 CH_msi_350 2 3 0.000096595
Oryza alta GWHAZTO00000010 2 CH_oal_509 2 2 0.000120908
Oryza alta GWHAZTO00000022 2 CH_oal_510 2 2 0.000120908
Oryza sativa ssp. indica Chr10 2 CH_osaindica_96 3 6 0.0000000800613
Oryza sativa Kitaake Chr10 2 CH_osak_124 3 3 0.00000000475225
Oryza sativa ssp. japonica chr10 2 CH_osa_78 3 4 0.0000000167348
Panicum hallii Chr09 2 CH_pha_352 2 4 0.000348645
Populus trichocarpa Chr07 2 CH_ptr_136 3 3 0.00000000501143
Secale cereale GWHASIY00000006 2 CH_sce_366 3 9 0.00000522149
Secale cereale GWHASIY00000001 2 CH_sce_895 2 2 0.000682936
Saccharum spontaneum Chr1C 2 CH_ssp_1006 2 2 0.000357884
Saccharum spontaneum Chr1D 2 CH_ssp_1007 2 2 0.000357884
Triticum aestivum Chr6D 2 CH_tae_1343 2 3 0.000561183

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001