Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.phytosterol biosynthesis.phytosterol esterification.acyl-CoA:cholesterol acyltransferase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_381 | 3 | 23 | 0.000478629 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_7 | 7 | 7 | 3.4494e-23 |
| Cenchrus purpureus | GWHAORA00000005 | 1 | CH_cpu_446 | 4 | 21 | 0.00000467738 |
| Chlamydomonas reinhardtii | chromosome_7 | 1 | CH_cre_11 | 4 | 10 | 0.0000000647967 |
| Eragrostis curvula | Contig33 | 1 | CH_ecu_38 | 8 | 26 | 1.94314e-19 |
| Glycine max | Gm08 | 1 | CH_gma_268 | 3 | 6 | 0.00000950418 |
| Glycine max | Gm18 | 1 | CH_gma_80 | 5 | 19 | 0.000000000143107 |
| Magnolia biondii | Chr16 | 1 | CH_mbi_74 | 4 | 8 | 0.0000000000240551 |
| Phyllostachys edulis | hic_scaffold_23 | 1 | CH_ped_223 | 3 | 7 | 0.00000731838 |
| Populus trichocarpa | Chr09 | 1 | CH_ptr_208 | 3 | 3 | 0.000000601371 |
| Secale cereale | GWHASIY00000007 | 1 | CH_sce_375 | 3 | 4 | 0.00000696338 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_521 | 3 | 7 | 0.0000608848 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_22 | 7 | 7 | 1.06297e-21 |
| Spirodela polyrhiza | pseudo1 | 1 | CH_spo_62 | 3 | 4 | 0.0000000623276 |
| Saccharum spontaneum | Chr5A | 1 | CH_ssp_479 | 3 | 4 | 0.00000691166 |
| Triticum aestivum | Chr2B | 1 | CH_tae_288 | 5 | 17 | 0.000000000115468 |
| Triticum turgidum | chr2B | 1 | CH_ttu_194 | 4 | 17 | 0.0000000274372 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00020.1 | 1 | CH_zjn_221 | 2 | 2 | 0.000554929 |
| Zostera marina | Chr01 | 1 | CH_zosmarina_137 | 3 | 23 | 0.0000989078 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_381 | 3 | 23 | 0.000478629 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_7 | 7 | 7 | 3.4494e-23 |
| Cenchrus purpureus | GWHAORA00000005 | 2 | CH_cpu_446 | 4 | 21 | 0.00000467738 |
| Chlamydomonas reinhardtii | chromosome_7 | 2 | CH_cre_11 | 4 | 10 | 0.0000000647967 |
| Eragrostis curvula | Contig33 | 2 | CH_ecu_38 | 8 | 26 | 1.94314e-19 |
| Glycine max | Gm08 | 2 | CH_gma_268 | 3 | 6 | 0.00000950418 |
| Glycine max | Gm18 | 2 | CH_gma_80 | 5 | 19 | 0.000000000143107 |
| Magnolia biondii | Chr16 | 2 | CH_mbi_74 | 4 | 8 | 0.0000000000240551 |
| Phyllostachys edulis | hic_scaffold_23 | 2 | CH_ped_223 | 3 | 7 | 0.00000731838 |
| Populus trichocarpa | Chr09 | 2 | CH_ptr_208 | 3 | 3 | 0.000000601371 |
| Secale cereale | GWHASIY00000007 | 2 | CH_sce_375 | 3 | 4 | 0.00000696338 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_521 | 3 | 7 | 0.0000608848 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_22 | 7 | 7 | 1.06297e-21 |
| Spirodela polyrhiza | pseudo1 | 2 | CH_spo_62 | 3 | 4 | 0.0000000623276 |
| Saccharum spontaneum | Chr5A | 2 | CH_ssp_479 | 3 | 4 | 0.00000691166 |
| Triticum aestivum | Chr2B | 2 | CH_tae_288 | 5 | 17 | 0.000000000115468 |
| Triticum turgidum | chr2B | 2 | CH_ttu_194 | 4 | 17 | 0.0000000274372 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00020.1 | 2 | CH_zjn_221 | 2 | 2 | 0.000554929 |
| Zostera marina | Chr01 | 2 | CH_zosmarina_137 | 3 | 23 | 0.0000989078 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |