Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.phytosterol biosynthesis.phytosterol C4-demethylation complex.sterone ketoreductase component SKR
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG06 | 1 | CH_aco_163 | 2 | 2 | 0.000829463 |
| Asparagus officinalis | AsparagusV1_03 | 1 | CH_aof_1 | 5 | 5 | 0.00000000000000514364 |
| Allium sativum | chr8 | 1 | CH_asa_747 | 2 | 2 | 0.000387537 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_392 | 2 | 3 | 0.000515668 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_353 | 3 | 4 | 0.000000688022 |
| Digitaria exilis | Dexi_CM05836_chr09B | 1 | CH_dex_746 | 2 | 2 | 0.000935766 |
| Digitaria exilis | Dexi_CM05836_chr09A | 1 | CH_dex_82 | 4 | 5 | 0.000000000039193 |
| Eragrostis curvula | 1 | 1 | CH_ecu_131 | 5 | 16 | 0.0000000000341644 |
| Eragrostis curvula | 4 | 1 | CH_ecu_265 | 5 | 68 | 0.0000000810406 |
| Elaeis guineensis | EG5.1_Chr3 | 1 | CH_egu_248 | 2 | 2 | 0.000284199 |
| Musa acuminata | chr06 | 1 | CH_mac_223 | 2 | 2 | 0.000852273 |
| Miscanthus sinensis | Chr01 | 1 | CH_msi_73 | 4 | 5 | 0.000000000105151 |
| Oryza sativa Kitaake | Chr7 | 1 | CH_osak_485 | 2 | 2 | 0.000844286 |
| Oropetium thomaeum | Chromosome_1 | 1 | CH_oth_58 | 3 | 3 | 0.0000000304045 |
| Populus trichocarpa | Chr13 | 1 | CH_ptr_451 | 2 | 2 | 0.000346801 |
| Populus trichocarpa | Chr19 | 1 | CH_ptr_452 | 2 | 2 | 0.000346801 |
| Sorghum bicolor | Chr01 | 1 | CH_sbi_177 | 3 | 4 | 0.000000722748 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_54 | 8 | 12 | 1.01565e-25 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_431 | 2 | 2 | 0.000176082 |
| Setaria viridis | Chr_09 | 1 | CH_svi_490 | 2 | 3 | 0.000939155 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00108.1 | 1 | CH_zjn_13 | 4 | 12 | 0.000000000375874 |
| Ananas comosus | LG06 | 2 | CH_aco_163 | 2 | 2 | 0.000829463 |
| Asparagus officinalis | AsparagusV1_03 | 2 | CH_aof_1 | 5 | 5 | 0.00000000000000514364 |
| Allium sativum | chr8 | 2 | CH_asa_747 | 2 | 2 | 0.000387537 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_392 | 2 | 3 | 0.000515668 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_353 | 3 | 4 | 0.000000688022 |
| Digitaria exilis | Dexi_CM05836_chr09B | 2 | CH_dex_746 | 2 | 2 | 0.000935766 |
| Digitaria exilis | Dexi_CM05836_chr09A | 2 | CH_dex_82 | 4 | 5 | 0.000000000039193 |
| Eragrostis curvula | 1 | 2 | CH_ecu_131 | 5 | 16 | 0.0000000000341644 |
| Eragrostis curvula | 4 | 2 | CH_ecu_265 | 5 | 68 | 0.0000000810406 |
| Elaeis guineensis | EG5.1_Chr3 | 2 | CH_egu_248 | 2 | 2 | 0.000284199 |
| Musa acuminata | chr06 | 2 | CH_mac_223 | 2 | 2 | 0.000852273 |
| Miscanthus sinensis | Chr01 | 2 | CH_msi_73 | 4 | 5 | 0.000000000105151 |
| Oryza sativa Kitaake | Chr7 | 2 | CH_osak_485 | 2 | 2 | 0.000844286 |
| Oropetium thomaeum | Chromosome_1 | 2 | CH_oth_58 | 3 | 3 | 0.0000000304045 |
| Populus trichocarpa | Chr13 | 2 | CH_ptr_451 | 2 | 2 | 0.000346801 |
| Populus trichocarpa | Chr19 | 2 | CH_ptr_452 | 2 | 2 | 0.000346801 |
| Sorghum bicolor | Chr01 | 2 | CH_sbi_177 | 3 | 4 | 0.000000722748 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_54 | 8 | 12 | 1.01565e-25 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_431 | 2 | 2 | 0.000176082 |
| Setaria viridis | Chr_09 | 2 | CH_svi_490 | 2 | 3 | 0.000939155 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00108.1 | 2 | CH_zjn_13 | 4 | 12 | 0.000000000375874 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |