Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.sterol C-22 desaturase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr2 1 CH_ath_390 2 3 0.000515668
Arabidopsis thaliana Chr2 1 CH_ath_391 2 3 0.000515668
Oryza alta GWHAZTO00000006 1 CH_oal_552 2 3 0.000181359
Oryza brachyantha 1 1 CH_obr_65 3 4 0.0000000214086
Oryza sativa ssp. indica Chr1 1 CH_osaindica_228 2 2 0.0000516609
Oryza sativa Kitaake Chr1 1 CH_osak_61 4 4 0.000000000000534998
Oryza sativa ssp. japonica chr01 1 CH_osa_29 4 5 0.00000000000220962
Phyllostachys edulis hic_scaffold_14 1 CH_ped_392 2 2 0.000244474
Arabidopsis thaliana Chr2 2 CH_ath_390 2 3 0.000515668
Arabidopsis thaliana Chr2 2 CH_ath_391 2 3 0.000515668
Oryza alta GWHAZTO00000006 2 CH_oal_552 2 3 0.000181359
Oryza brachyantha 1 2 CH_obr_65 3 4 0.0000000214086
Oryza sativa ssp. indica Chr1 2 CH_osaindica_228 2 2 0.0000516609
Oryza sativa Kitaake Chr1 2 CH_osak_61 4 4 0.000000000000534998
Oryza sativa ssp. japonica chr01 2 CH_osa_29 4 5 0.00000000000220962
Phyllostachys edulis hic_scaffold_14 2 CH_ped_392 2 2 0.000244474

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001