Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.sterol C-24 methyltransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG03 1 CH_aco_80 2 2 0.0000829463
Allium sativum chr6 1 CH_asa_653 2 2 0.000232522
Amborella trichopoda AmTr_v1.0_scaffold00103 1 CH_atr_80 3 3 0.0000000378665
Dioscorea dumetorum contig267 1 CH_ddu_102 3 5 0.00000143173
Glycine max Gm12 1 CH_gma_567 2 2 0.000569336
Sorghum bicolor Chr01 1 CH_sbi_139 3 3 0.000000103262
Sequoiadendron giganteum chr6 1 CH_sgi_532 3 5 0.000000142381
Zea mays B73 5 1 CH_zma_298 2 3 0.000920308
Ananas comosus LG03 2 CH_aco_80 2 2 0.0000829463
Allium sativum chr6 2 CH_asa_653 2 2 0.000232522
Amborella trichopoda AmTr_v1.0_scaffold00103 2 CH_atr_80 3 3 0.0000000378665
Dioscorea dumetorum contig267 2 CH_ddu_102 3 5 0.00000143173
Glycine max Gm12 2 CH_gma_567 2 2 0.000569336
Sorghum bicolor Chr01 2 CH_sbi_139 3 3 0.000000103262
Sequoiadendron giganteum chr6 2 CH_sgi_532 3 5 0.000000142381
Zea mays B73 5 2 CH_zma_298 2 3 0.000920308

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001