Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.sphingolipid biosynthesis.sphingobase hydroxylase (SBH)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG06 1 CH_aco_164 2 2 0.000829463
Allium sativum chr4 1 CH_asa_78 6 20 0.0000000000450085
Allium sativum chr3 1 CH_asa_90 5 9 0.000000000303272
Calamus simplicifolius scaffold977 1 CH_calsi_118 3 5 0.00000567656
Dioscorea dumetorum contig544 1 CH_ddu_129 3 5 0.0000118087
Eragrostis curvula 3 1 CH_ecu_458 3 11 0.0000208209
Elaeis guineensis EG5.1_Chr13 1 CH_egu_68 3 3 0.00000113082
Magnolia biondii Chr02 1 CH_mbi_538 2 2 0.000291397
Panicum hallii Chr04 1 CH_pha_429 2 2 0.000871662
Populus trichocarpa Chr05 1 CH_ptr_396 2 2 0.0001734
Sorghum bicolor Chr04 1 CH_sbi_111 4 8 0.0000000139844
Vanilla planifolia CM028157.1 1 CH_vpl_30 3 3 0.00000000818945
Ananas comosus LG06 2 CH_aco_164 2 2 0.000829463
Allium sativum chr4 2 CH_asa_78 6 20 0.0000000000450085
Allium sativum chr3 2 CH_asa_90 5 9 0.000000000303272
Calamus simplicifolius scaffold977 2 CH_calsi_118 3 5 0.00000567656
Dioscorea dumetorum contig544 2 CH_ddu_129 3 5 0.0000118087
Eragrostis curvula 3 2 CH_ecu_458 3 11 0.0000208209
Elaeis guineensis EG5.1_Chr13 2 CH_egu_68 3 3 0.00000113082
Magnolia biondii Chr02 2 CH_mbi_538 2 2 0.000291397
Panicum hallii Chr04 2 CH_pha_429 2 2 0.000871662
Populus trichocarpa Chr05 2 CH_ptr_396 2 2 0.0001734
Sorghum bicolor Chr04 2 CH_sbi_111 4 8 0.0000000139844
Vanilla planifolia CM028157.1 2 CH_vpl_30 3 3 0.00000000818945

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001