Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.glycerolipid biosynthesis.phosphatidylcholine.choline homeostasis.phosphocholine phosphatase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr6 | 1 | CH_asa_176 | 4 | 9 | 0.000000040002 |
| Allium sativum | chr5 | 1 | CH_asa_440 | 3 | 7 | 0.0000441184 |
| Allium sativum | chr5 | 1 | CH_asa_92 | 4 | 4 | 0.000000000317802 |
| Amborella trichopoda | AmTr_v1.0_scaffold00036 | 1 | CH_atr_187 | 2 | 2 | 0.0000794407 |
| Elaeis guineensis | EG5.1_Chr6 | 1 | CH_egu_275 | 2 | 2 | 0.000568397 |
| Glycine max | Gm07 | 1 | CH_gma_177 | 3 | 3 | 0.000000259319 |
| Glycine max | Gm08 | 1 | CH_gma_178 | 3 | 3 | 0.000000259319 |
| Phyllostachys edulis | hic_scaffold_14 | 1 | CH_ped_159 | 3 | 3 | 0.00000054788 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_48 | 5 | 5 | 0.00000000000000812223 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_32 | 9 | 11 | 1.36081e-28 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_155 | 3 | 3 | 0.000000103353 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_551 | 2 | 2 | 0.000880411 |
| Spirodela polyrhiza | pseudo21 | 1 | CH_spo_181 | 2 | 2 | 0.000305764 |
| Triticum aestivum | Chr3B | 1 | CH_tae_149 | 5 | 6 | 0.0000000000000340976 |
| Triticum aestivum | Chr3D | 1 | CH_tae_695 | 3 | 4 | 0.00000142761 |
| Triticum dicoccoides | 3B | 1 | CH_tdi_21 | 6 | 6 | 4.793e-19 |
| Allium sativum | chr6 | 2 | CH_asa_176 | 4 | 9 | 0.000000040002 |
| Allium sativum | chr5 | 2 | CH_asa_440 | 3 | 7 | 0.0000441184 |
| Allium sativum | chr5 | 2 | CH_asa_92 | 4 | 4 | 0.000000000317802 |
| Amborella trichopoda | AmTr_v1.0_scaffold00036 | 2 | CH_atr_187 | 2 | 2 | 0.0000794407 |
| Elaeis guineensis | EG5.1_Chr6 | 2 | CH_egu_275 | 2 | 2 | 0.000568397 |
| Glycine max | Gm07 | 2 | CH_gma_177 | 3 | 3 | 0.000000259319 |
| Glycine max | Gm08 | 2 | CH_gma_178 | 3 | 3 | 0.000000259319 |
| Phyllostachys edulis | hic_scaffold_14 | 2 | CH_ped_159 | 3 | 3 | 0.00000054788 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_48 | 5 | 5 | 0.00000000000000812223 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_32 | 9 | 11 | 1.36081e-28 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_155 | 3 | 3 | 0.000000103353 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_551 | 2 | 2 | 0.000880411 |
| Spirodela polyrhiza | pseudo21 | 2 | CH_spo_181 | 2 | 2 | 0.000305764 |
| Triticum aestivum | Chr3B | 2 | CH_tae_149 | 5 | 6 | 0.0000000000000340976 |
| Triticum aestivum | Chr3D | 2 | CH_tae_695 | 3 | 4 | 0.00000142761 |
| Triticum dicoccoides | 3B | 2 | CH_tdi_21 | 6 | 6 | 4.793e-19 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |