Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.delta-12/delta-15 fatty acid desaturase (FAD2/3/6-8)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aegilops tauschii | 6D | 1 | CH_ata_211 | 3 | 12 | 0.0000671336 |
| Dioscorea dumetorum | contig544 | 1 | CH_ddu_114 | 3 | 5 | 0.0000025054 |
| Hordeum vulgare | chr6H | 1 | CH_hvu_242 | 3 | 9 | 0.0000174208 |
| Lolium perenne | Lp_chr7_0.1 | 1 | CH_lpe_163 | 3 | 6 | 0.0000017353 |
| Magnolia biondii | Chr03 | 1 | CH_mbi_679 | 2 | 3 | 0.00087414 |
| Oryza alta | GWHAZTO00000007 | 1 | CH_oal_232 | 3 | 4 | 0.00000136428 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_127 | 3 | 3 | 0.00000035144 |
| Phyllostachys edulis | hic_scaffold_2 | 1 | CH_ped_192 | 3 | 4 | 0.0000016434 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_250 | 3 | 4 | 0.00000440907 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_504 | 3 | 4 | 0.0000000569549 |
| Solanum lycopersicum | SL4.0ch12 | 1 | CH_sly_187 | 4 | 11 | 0.000000611067 |
| Solanum lycopersicum | SL4.0ch12 | 1 | CH_sly_70 | 5 | 6 | 0.00000000000457503 |
| Spirodela polyrhiza | pseudo23 | 1 | CH_spo_228 | 2 | 2 | 0.000611527 |
| Triticum aestivum | Chr6A | 1 | CH_tae_1075 | 3 | 7 | 0.000120132 |
| Triticum aestivum | Chr6B | 1 | CH_tae_503 | 4 | 8 | 0.0000000719115 |
| Triticum aestivum | Chr6D | 1 | CH_tae_504 | 4 | 8 | 0.0000000719115 |
| Triticum dicoccoides | 6A | 1 | CH_tdi_390 | 3 | 8 | 0.0000716582 |
| Triticum turgidum | chr6B | 1 | CH_ttu_307 | 3 | 3 | 0.00000167031 |
| Triticum turgidum | chr6A | 1 | CH_ttu_475 | 3 | 7 | 0.0000584107 |
| Aegilops tauschii | 6D | 2 | CH_ata_211 | 3 | 12 | 0.0000671336 |
| Dioscorea dumetorum | contig544 | 2 | CH_ddu_114 | 3 | 5 | 0.0000025054 |
| Hordeum vulgare | chr6H | 2 | CH_hvu_242 | 3 | 9 | 0.0000174208 |
| Lolium perenne | Lp_chr7_0.1 | 2 | CH_lpe_163 | 3 | 6 | 0.0000017353 |
| Magnolia biondii | Chr03 | 2 | CH_mbi_679 | 2 | 3 | 0.00087414 |
| Oryza alta | GWHAZTO00000007 | 2 | CH_oal_232 | 3 | 4 | 0.00000136428 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_127 | 3 | 3 | 0.00000035144 |
| Phyllostachys edulis | hic_scaffold_2 | 2 | CH_ped_192 | 3 | 4 | 0.0000016434 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_250 | 3 | 4 | 0.00000440907 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_504 | 3 | 4 | 0.0000000569549 |
| Solanum lycopersicum | SL4.0ch12 | 2 | CH_sly_187 | 4 | 11 | 0.000000611067 |
| Solanum lycopersicum | SL4.0ch12 | 2 | CH_sly_70 | 5 | 6 | 0.00000000000457503 |
| Spirodela polyrhiza | pseudo23 | 2 | CH_spo_228 | 2 | 2 | 0.000611527 |
| Triticum aestivum | Chr6A | 2 | CH_tae_1075 | 3 | 7 | 0.000120132 |
| Triticum aestivum | Chr6B | 2 | CH_tae_503 | 4 | 8 | 0.0000000719115 |
| Triticum aestivum | Chr6D | 2 | CH_tae_504 | 4 | 8 | 0.0000000719115 |
| Triticum dicoccoides | 6A | 2 | CH_tdi_390 | 3 | 8 | 0.0000716582 |
| Triticum turgidum | chr6B | 2 | CH_ttu_307 | 3 | 3 | 0.00000167031 |
| Triticum turgidum | chr6A | 2 | CH_ttu_475 | 3 | 7 | 0.0000584107 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |