Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.delta-9 stearoyl-ACP desaturase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr6 | 1 | CH_asa_247 | 3 | 3 | 0.00000102503 |
| Amborella trichopoda | AmTr_v1.0_scaffold00001 | 1 | CH_atr_110 | 3 | 4 | 0.000000757232 |
| Eragrostis curvula | Contig30 | 1 | CH_ecu_828 | 3 | 29 | 0.000985662 |
| Musa acuminata | chr05 | 1 | CH_mac_63 | 3 | 3 | 0.000000581112 |
| Phyllostachys edulis | hic_scaffold_23 | 1 | CH_ped_253 | 3 | 4 | 0.0000201551 |
| Phyllostachys edulis | hic_scaffold_13 | 1 | CH_ped_6 | 10 | 13 | 1.23049e-27 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_549 | 2 | 2 | 0.000867002 |
| Secale cereale | GWHASIY00000002 | 1 | CH_sce_22 | 7 | 8 | 4.35022e-19 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_278 | 4 | 4 | 0.0000000000121398 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_97 | 4 | 5 | 0.000000000382137 |
| Selaginella moellendorffii | scaffold_37 | 1 | CH_smo_9 | 6 | 6 | 2.74129e-16 |
| Triticum aestivum | Chr5A | 1 | CH_tae_1299 | 3 | 11 | 0.000471716 |
| Triticum aestivum | Chr2A | 1 | CH_tae_739 | 3 | 3 | 0.00000286392 |
| Triticum aestivum | Chr2D | 1 | CH_tae_740 | 3 | 3 | 0.00000286392 |
| Triticum dicoccoides | 2B | 1 | CH_tdi_148 | 4 | 6 | 0.0000000175892 |
| Triticum turgidum | chr2A | 1 | CH_ttu_323 | 3 | 3 | 0.0000019487 |
| Triticum turgidum | chr5A | 1 | CH_ttu_679 | 3 | 13 | 0.000556066 |
| Vanilla planifolia | CM028152.1 | 1 | CH_vpl_381 | 3 | 23 | 0.000809351 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00076.1 | 1 | CH_zjn_81 | 3 | 6 | 0.0000149382 |
| Allium sativum | chr6 | 2 | CH_asa_247 | 3 | 3 | 0.00000102503 |
| Amborella trichopoda | AmTr_v1.0_scaffold00001 | 2 | CH_atr_110 | 3 | 4 | 0.000000757232 |
| Eragrostis curvula | Contig30 | 2 | CH_ecu_828 | 3 | 29 | 0.000985662 |
| Musa acuminata | chr05 | 2 | CH_mac_63 | 3 | 3 | 0.000000581112 |
| Phyllostachys edulis | hic_scaffold_23 | 2 | CH_ped_253 | 3 | 4 | 0.0000201551 |
| Phyllostachys edulis | hic_scaffold_13 | 2 | CH_ped_6 | 10 | 13 | 1.23049e-27 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_549 | 2 | 2 | 0.000867002 |
| Secale cereale | GWHASIY00000002 | 2 | CH_sce_22 | 7 | 8 | 4.35022e-19 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_278 | 4 | 4 | 0.0000000000121398 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_97 | 4 | 5 | 0.000000000382137 |
| Selaginella moellendorffii | scaffold_37 | 2 | CH_smo_9 | 6 | 6 | 2.74129e-16 |
| Triticum aestivum | Chr5A | 2 | CH_tae_1299 | 3 | 11 | 0.000471716 |
| Triticum aestivum | Chr2A | 2 | CH_tae_739 | 3 | 3 | 0.00000286392 |
| Triticum aestivum | Chr2D | 2 | CH_tae_740 | 3 | 3 | 0.00000286392 |
| Triticum dicoccoides | 2B | 2 | CH_tdi_148 | 4 | 6 | 0.0000000175892 |
| Triticum turgidum | chr2A | 2 | CH_ttu_323 | 3 | 3 | 0.0000019487 |
| Triticum turgidum | chr5A | 2 | CH_ttu_679 | 3 | 13 | 0.000556066 |
| Vanilla planifolia | CM028152.1 | 2 | CH_vpl_381 | 3 | 23 | 0.000809351 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00076.1 | 2 | CH_zjn_81 | 3 | 6 | 0.0000149382 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |