Functional clusters

Information

  • Type MapMan
  • Description External stimuli response.salinity.SOS (Salt Overly Sensitive) signalling pathway.sodium:proton antiporter (SOS1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr7_1 1 CH_asa_805 2 2 0.000581305
Calamus simplicifolius scaffold121 1 CH_calsi_120 3 4 0.00000594752
Calamus simplicifolius scaffold83 1 CH_calsi_133 3 6 0.0000297221
Calamus simplicifolius scaffold28 1 CH_calsi_22 5 11 0.0000000000556723
Elaeis guineensis EG5.1_Chr13 1 CH_egu_165 2 2 0.0000947329
Miscanthus sinensis Chr15 1 CH_msi_415 2 4 0.000193187
Sequoiadendron giganteum chr9 1 CH_sgi_927 2 2 0.0000487151
Solanum lycopersicum SL4.0ch04 1 CH_sly_425 2 2 0.000176082
Saccharum spontaneum Chr2B 1 CH_ssp_746 3 37 0.000132519
Allium sativum chr7_1 2 CH_asa_805 2 2 0.000581305
Calamus simplicifolius scaffold121 2 CH_calsi_120 3 4 0.00000594752
Calamus simplicifolius scaffold83 2 CH_calsi_133 3 6 0.0000297221
Calamus simplicifolius scaffold28 2 CH_calsi_22 5 11 0.0000000000556723
Elaeis guineensis EG5.1_Chr13 2 CH_egu_165 2 2 0.0000947329
Miscanthus sinensis Chr15 2 CH_msi_415 2 4 0.000193187
Sequoiadendron giganteum chr9 2 CH_sgi_927 2 2 0.0000487151
Solanum lycopersicum SL4.0ch04 2 CH_sly_425 2 2 0.000176082
Saccharum spontaneum Chr2B 2 CH_ssp_746 3 37 0.000132519

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001