Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.copper.uptake transport.copper transporter (COPT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr5 1 CH_ath_373 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00165 1 CH_atr_254 2 2 0.000238322
Brachypodium distachyon Bd1 1 CH_bdi_325 2 2 0.000616675
Chara braunii BFEA01000158 1 CH_cbr_29 3 7 0.000000271579
Cenchrus purpureus GWHAORA00000007 1 CH_cpu_893 2 3 0.000927371
Digitaria exilis Dexi_CM05836_chr05A 1 CH_dex_628 2 2 0.000501303
Digitaria exilis Dexi_CM05836_chr05B 1 CH_dex_629 2 2 0.000501303
Miscanthus sinensis Chr06 1 CH_msi_83 4 5 0.000000000358
Oryza sativa ssp. indica Chr1 1 CH_osaindica_396 2 2 0.000774913
Selaginella moellendorffii scaffold_21 1 CH_smo_46 3 4 0.00000292876
Arabidopsis thaliana Chr5 2 CH_ath_373 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00165 2 CH_atr_254 2 2 0.000238322
Brachypodium distachyon Bd1 2 CH_bdi_325 2 2 0.000616675
Chara braunii BFEA01000158 2 CH_cbr_29 3 7 0.000000271579
Cenchrus purpureus GWHAORA00000007 2 CH_cpu_893 2 3 0.000927371
Digitaria exilis Dexi_CM05836_chr05A 2 CH_dex_628 2 2 0.000501303
Digitaria exilis Dexi_CM05836_chr05B 2 CH_dex_629 2 2 0.000501303
Miscanthus sinensis Chr06 2 CH_msi_83 4 5 0.000000000358
Oryza sativa ssp. indica Chr1 2 CH_osaindica_396 2 2 0.000774913
Selaginella moellendorffii scaffold_21 2 CH_smo_46 3 4 0.00000292876

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001