Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.phytosiderophore biosynthesis.mugineic acid 3-dioxygenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG25 1 CH_aco_103 2 2 0.000248839
Cenchrus purpureus GWHAORA00000008 1 CH_cpu_510 3 6 0.0000194854
Cenchrus purpureus GWHAORA00000003 1 CH_cpu_532 4 44 0.0000284353
Hordeum vulgare chr7H 1 CH_hvu_159 3 3 0.00000020753
Hordeum vulgare chr4H 1 CH_hvu_63 4 4 0.0000000000252679
Miscanthus sinensis Chr14 1 CH_msi_51 4 5 0.00000000000250375
Sorghum bicolor Chr08 1 CH_sbi_68 4 6 0.0000000000454343
Secale cereale GWHASIY00000005 1 CH_sce_66 5 6 0.00000000000119638
Saccharum spontaneum Chr2D 1 CH_ssp_37 5 6 0.0000000000000115488
Saccharum spontaneum Chr2C 1 CH_ssp_433 3 6 0.00000375605
Setaria viridis Chr_03 1 CH_svi_63 4 4 0.0000000000298351
Ananas comosus LG25 2 CH_aco_103 2 2 0.000248839
Cenchrus purpureus GWHAORA00000008 2 CH_cpu_510 3 6 0.0000194854
Cenchrus purpureus GWHAORA00000003 2 CH_cpu_532 4 44 0.0000284353
Hordeum vulgare chr7H 2 CH_hvu_159 3 3 0.00000020753
Hordeum vulgare chr4H 2 CH_hvu_63 4 4 0.0000000000252679
Miscanthus sinensis Chr14 2 CH_msi_51 4 5 0.00000000000250375
Sorghum bicolor Chr08 2 CH_sbi_68 4 6 0.0000000000454343
Secale cereale GWHASIY00000005 2 CH_sce_66 5 6 0.00000000000119638
Saccharum spontaneum Chr2D 2 CH_ssp_37 5 6 0.0000000000000115488
Saccharum spontaneum Chr2C 2 CH_ssp_433 3 6 0.00000375605
Setaria viridis Chr_03 2 CH_svi_63 4 4 0.0000000000298351

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001