Functional clusters

Information

  • Type MapMan
  • Description Nutrient uptake.metal homeostasis.iron.chelation-based strategy uptake.phytosiderophore biosynthesis.nicotianamine synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr1 1 CH_asa_42 5 8 0.00000000000000568403
Brachypodium distachyon Bd1 1 CH_bdi_349 2 2 0.000925012
Eragrostis curvula 4 1 CH_ecu_788 2 7 0.000814143
Hordeum vulgare chr4H 1 CH_hvu_27 6 11 0.00000000000000343458
Musa acuminata chr11 1 CH_mac_172 2 2 0.000340909
Magnolia biondii Chr14 1 CH_mbi_206 3 8 0.000000792362
Oryza alta GWHAZTO00000015 1 CH_oal_166 3 3 0.000000100505
Oryza brachyantha 3 1 CH_obr_276 2 3 0.000537576
Oryza sativa ssp. indica Chr3 1 CH_osaindica_360 2 3 0.000464928
Oryza sativa Kitaake Chr3 1 CH_osak_355 2 2 0.000168857
Oryza sativa ssp. japonica chr03 1 CH_osa_264 2 2 0.000158437
Phyllostachys edulis hic_scaffold_15 1 CH_ped_210 3 3 0.00000441043
Phyllostachys edulis hic_scaffold_21 1 CH_ped_85 4 4 0.00000000179713
Populus trichocarpa Chr10 1 CH_ptr_421 2 2 0.000346801
Spirodela polyrhiza pseudo3 1 CH_spo_122 2 2 0.000101921
Triticum aestivum Chr6D 1 CH_tae_988 3 6 0.000052038
Zea mays B73 9 1 CH_zma_31 5 16 0.0000000000281837
Allium sativum chr1 2 CH_asa_42 5 8 0.00000000000000568403
Brachypodium distachyon Bd1 2 CH_bdi_349 2 2 0.000925012
Eragrostis curvula 4 2 CH_ecu_788 2 7 0.000814143
Hordeum vulgare chr4H 2 CH_hvu_27 6 11 0.00000000000000343458
Musa acuminata chr11 2 CH_mac_172 2 2 0.000340909
Magnolia biondii Chr14 2 CH_mbi_206 3 8 0.000000792362
Oryza alta GWHAZTO00000015 2 CH_oal_166 3 3 0.000000100505
Oryza brachyantha 3 2 CH_obr_276 2 3 0.000537576
Oryza sativa ssp. indica Chr3 2 CH_osaindica_360 2 3 0.000464928
Oryza sativa Kitaake Chr3 2 CH_osak_355 2 2 0.000168857
Oryza sativa ssp. japonica chr03 2 CH_osa_264 2 2 0.000158437
Phyllostachys edulis hic_scaffold_15 2 CH_ped_210 3 3 0.00000441043
Phyllostachys edulis hic_scaffold_21 2 CH_ped_85 4 4 0.00000000179713
Populus trichocarpa Chr10 2 CH_ptr_421 2 2 0.000346801
Spirodela polyrhiza pseudo3 2 CH_spo_122 2 2 0.000101921
Triticum aestivum Chr6D 2 CH_tae_988 3 6 0.000052038
Zea mays B73 9 2 CH_zma_31 5 16 0.0000000000281837

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001