Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.OPT family.oligopeptide transporter (OPT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Ananas comosus | LG03 | 1 | CH_aco_88 | 3 | 10 | 0.000148346 |
| Aegilops tauschii | 7D | 1 | CH_ata_162 | 3 | 6 | 0.00000872526 |
| Amborella trichopoda | AmTr_v1.0_scaffold00041 | 1 | CH_atr_69 | 4 | 10 | 0.0000000110468 |
| Calamus simplicifolius | scaffold569 | 1 | CH_calsi_33 | 4 | 5 | 0.00000000324424 |
| Cenchrus purpureus | GWHAORA00000013 | 1 | CH_cpu_572 | 3 | 6 | 0.0000579837 |
| Cenchrus purpureus | GWHAORA00000004 | 1 | CH_cpu_640 | 4 | 43 | 0.000115045 |
| Digitaria exilis | Dexi_CM05836_chr01B | 1 | CH_dex_253 | 3 | 3 | 0.000000938221 |
| Hordeum vulgare | chr7H | 1 | CH_hvu_339 | 3 | 14 | 0.000148152 |
| Musa acuminata | chr01 | 1 | CH_mac_29 | 4 | 4 | 0.000000000393483 |
| Magnolia biondii | Chr15 | 1 | CH_mbi_209 | 4 | 9 | 0.000000884466 |
| Magnolia biondii | Chr15 | 1 | CH_mbi_4 | 14 | 61 | 7.92401e-29 |
| Magnolia biondii | Chr16 | 1 | CH_mbi_683 | 3 | 9 | 0.000970825 |
| Miscanthus sinensis | Chr08 | 1 | CH_msi_75 | 4 | 4 | 0.000000000136709 |
| Oryza brachyantha | 6 | 1 | CH_obr_86 | 4 | 17 | 0.00000019139 |
| Oryza sativa ssp. indica | Chr6 | 1 | CH_osaindica_262 | 3 | 16 | 0.000152748 |
| Oryza sativa Kitaake | Chr6 | 1 | CH_osak_380 | 3 | 16 | 0.000223097 |
| Oryza sativa ssp. japonica | chr06 | 1 | CH_osa_355 | 3 | 20 | 0.00048521 |
| Phyllostachys edulis | hic_scaffold_8 | 1 | CH_ped_307 | 3 | 10 | 0.000108636 |
| Panicum hallii | Chr01 | 1 | CH_pha_187 | 3 | 5 | 0.00000283587 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_346 | 3 | 3 | 0.00000354473 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_401 | 3 | 4 | 0.0000141745 |
| Sequoiadendron giganteum | HRSCAF_1 | 1 | CH_sgi_349 | 4 | 4 | 0.00000000106137 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_570 | 4 | 12 | 0.00000052413 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_675 | 3 | 4 | 0.0000116158 |
| Solanum lycopersicum | SL4.0ch04 | 1 | CH_sly_227 | 3 | 4 | 0.00000340994 |
| Saccharum spontaneum | Chr8D | 1 | CH_ssp_1213 | 3 | 13 | 0.000712699 |
| Saccharum spontaneum | Chr8A | 1 | CH_ssp_566 | 4 | 31 | 0.0000223605 |
| Triticum aestivum | Chr7D | 1 | CH_tae_1039 | 3 | 7 | 0.000100149 |
| Triticum aestivum | Chr7A | 1 | CH_tae_1111 | 3 | 8 | 0.000160203 |
| Vanilla planifolia | CM028160.1 | 1 | CH_vpl_102 | 3 | 3 | 0.00000793558 |
| Zostera marina | Chr01 | 1 | CH_zosmarina_212 | 2 | 2 | 0.000579346 |
| Ananas comosus | LG03 | 2 | CH_aco_88 | 3 | 10 | 0.000148346 |
| Aegilops tauschii | 7D | 2 | CH_ata_162 | 3 | 6 | 0.00000872526 |
| Amborella trichopoda | AmTr_v1.0_scaffold00041 | 2 | CH_atr_69 | 4 | 10 | 0.0000000110468 |
| Calamus simplicifolius | scaffold569 | 2 | CH_calsi_33 | 4 | 5 | 0.00000000324424 |
| Cenchrus purpureus | GWHAORA00000013 | 2 | CH_cpu_572 | 3 | 6 | 0.0000579837 |
| Cenchrus purpureus | GWHAORA00000004 | 2 | CH_cpu_640 | 4 | 43 | 0.000115045 |
| Digitaria exilis | Dexi_CM05836_chr01B | 2 | CH_dex_253 | 3 | 3 | 0.000000938221 |
| Hordeum vulgare | chr7H | 2 | CH_hvu_339 | 3 | 14 | 0.000148152 |
| Musa acuminata | chr01 | 2 | CH_mac_29 | 4 | 4 | 0.000000000393483 |
| Magnolia biondii | Chr15 | 2 | CH_mbi_209 | 4 | 9 | 0.000000884466 |
| Magnolia biondii | Chr15 | 2 | CH_mbi_4 | 14 | 61 | 7.92401e-29 |
| Magnolia biondii | Chr16 | 2 | CH_mbi_683 | 3 | 9 | 0.000970825 |
| Miscanthus sinensis | Chr08 | 2 | CH_msi_75 | 4 | 4 | 0.000000000136709 |
| Oryza brachyantha | 6 | 2 | CH_obr_86 | 4 | 17 | 0.00000019139 |
| Oryza sativa ssp. indica | Chr6 | 2 | CH_osaindica_262 | 3 | 16 | 0.000152748 |
| Oryza sativa Kitaake | Chr6 | 2 | CH_osak_380 | 3 | 16 | 0.000223097 |
| Oryza sativa ssp. japonica | chr06 | 2 | CH_osa_355 | 3 | 20 | 0.00048521 |
| Phyllostachys edulis | hic_scaffold_8 | 2 | CH_ped_307 | 3 | 10 | 0.000108636 |
| Panicum hallii | Chr01 | 2 | CH_pha_187 | 3 | 5 | 0.00000283587 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_346 | 3 | 3 | 0.00000354473 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_401 | 3 | 4 | 0.0000141745 |
| Sequoiadendron giganteum | HRSCAF_1 | 2 | CH_sgi_349 | 4 | 4 | 0.00000000106137 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_570 | 4 | 12 | 0.00000052413 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_675 | 3 | 4 | 0.0000116158 |
| Solanum lycopersicum | SL4.0ch04 | 2 | CH_sly_227 | 3 | 4 | 0.00000340994 |
| Saccharum spontaneum | Chr8D | 2 | CH_ssp_1213 | 3 | 13 | 0.000712699 |
| Saccharum spontaneum | Chr8A | 2 | CH_ssp_566 | 4 | 31 | 0.0000223605 |
| Triticum aestivum | Chr7D | 2 | CH_tae_1039 | 3 | 7 | 0.000100149 |
| Triticum aestivum | Chr7A | 2 | CH_tae_1111 | 3 | 8 | 0.000160203 |
| Vanilla planifolia | CM028160.1 | 2 | CH_vpl_102 | 3 | 3 | 0.00000793558 |
| Zostera marina | Chr01 | 2 | CH_zosmarina_212 | 2 | 2 | 0.000579346 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |