Functional clusters

Information

  • Type MapMan
  • Description Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.nucleoporin (NUP214)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr1 1 CH_asa_115 3 3 0.00000000225282
Ceratophyllum demersum 1 1 CH_cde_84 2 2 0.0000789796
Populus trichocarpa Chr01 1 CH_ptr_361 2 2 0.0001734
Sorghum bicolor Chr01 1 CH_sbi_369 2 2 0.000352009
Secale cereale GWHASIY00000002 1 CH_sce_582 2 3 0.000136584
Sequoiadendron giganteum chr2 1 CH_sgi_771 2 2 0.0000487151
Solanum lycopersicum SL4.0ch02 1 CH_sly_146 3 5 0.0000000516734
Spirodela polyrhiza pseudo3 1 CH_spo_121 2 2 0.000101921
Triticum turgidum chr2A 1 CH_ttu_543 2 2 0.000187521
Allium sativum chr1 2 CH_asa_115 3 3 0.00000000225282
Ceratophyllum demersum 1 2 CH_cde_84 2 2 0.0000789796
Populus trichocarpa Chr01 2 CH_ptr_361 2 2 0.0001734
Sorghum bicolor Chr01 2 CH_sbi_369 2 2 0.000352009
Secale cereale GWHASIY00000002 2 CH_sce_582 2 3 0.000136584
Sequoiadendron giganteum chr2 2 CH_sgi_771 2 2 0.0000487151
Solanum lycopersicum SL4.0ch02 2 CH_sly_146 3 5 0.0000000516734
Spirodela polyrhiza pseudo3 2 CH_spo_121 2 2 0.000101921
Triticum turgidum chr2A 2 CH_ttu_543 2 2 0.000187521

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001