Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.endocytic trafficking.clathrin-independent machinery.adapter protein (Flotillin)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Asparagus officinalis AsparagusV1_01 1 CH_aof_183 3 49 0.00062976
Arabidopsis thaliana Chr5 1 CH_ath_275 2 2 0.0000859476
Amborella trichopoda AmTr_v1.0_scaffold00029 1 CH_atr_301 2 2 0.000476644
Amborella trichopoda AmTr_v1.0_scaffold00007 1 CH_atr_302 2 2 0.000476644
Brachypodium distachyon Bd3 1 CH_bdi_61 3 3 0.00000000570449
Cenchrus purpureus GWHAORA00000004 1 CH_cpu_681 2 2 0.000185483
Cenchrus purpureus GWHAORA00000011 1 CH_cpu_682 2 2 0.000185483
Digitaria exilis Dexi_CM05836_chr09B 1 CH_dex_511 2 2 0.000200521
Digitaria exilis Dexi_CM05836_chr09A 1 CH_dex_512 2 2 0.000200521
Eragrostis curvula 1 1 CH_ecu_585 2 2 0.000116317
Lolium perenne Lp_chr1_0 1 CH_lpe_171 3 11 0.00000255623
Marchantia polymorpha scaffold_85 1 CH_mpo_80 2 2 0.000110442
Oryza alta GWHAZTO00000022 1 CH_oal_185 3 7 0.000000213171
Oryza brachyantha 10 1 CH_obr_72 3 6 0.0000000535199
Oryza sativa ssp. indica Chr10 1 CH_osaindica_120 3 9 0.000000336231
Oryza sativa Kitaake Chr10 1 CH_osak_139 3 4 0.0000000190085
Oryza sativa ssp. japonica chr10 1 CH_osa_99 3 6 0.0000000836696
Oropetium thomaeum Chromosome_1 1 CH_oth_186 2 3 0.000213546
Panicum hallii Chr09 1 CH_pha_292 2 3 0.000174327
Sorghum bicolor Chr01 1 CH_sbi_290 2 2 0.0000586682
Spirodela polyrhiza pseudo11 1 CH_spo_47 3 3 0.0000000155827
Saccharum spontaneum Chr1B 1 CH_ssp_519 3 9 0.0000118289
Zoysia japonica ssp. nagirizaki Zjn_sc00020.1 1 CH_zjn_177 2 2 0.000221971
Zoysia japonica ssp. nagirizaki Zjn_sc00017.1 1 CH_zjn_178 2 2 0.000221971
Asparagus officinalis AsparagusV1_01 2 CH_aof_183 3 49 0.00062976
Arabidopsis thaliana Chr5 2 CH_ath_275 2 2 0.0000859476
Amborella trichopoda AmTr_v1.0_scaffold00029 2 CH_atr_301 2 2 0.000476644
Amborella trichopoda AmTr_v1.0_scaffold00007 2 CH_atr_302 2 2 0.000476644
Brachypodium distachyon Bd3 2 CH_bdi_61 3 3 0.00000000570449
Cenchrus purpureus GWHAORA00000004 2 CH_cpu_681 2 2 0.000185483
Cenchrus purpureus GWHAORA00000011 2 CH_cpu_682 2 2 0.000185483
Digitaria exilis Dexi_CM05836_chr09B 2 CH_dex_511 2 2 0.000200521
Digitaria exilis Dexi_CM05836_chr09A 2 CH_dex_512 2 2 0.000200521
Eragrostis curvula 1 2 CH_ecu_585 2 2 0.000116317
Lolium perenne Lp_chr1_0 2 CH_lpe_171 3 11 0.00000255623
Marchantia polymorpha scaffold_85 2 CH_mpo_80 2 2 0.000110442
Oryza alta GWHAZTO00000022 2 CH_oal_185 3 7 0.000000213171
Oryza brachyantha 10 2 CH_obr_72 3 6 0.0000000535199
Oryza sativa ssp. indica Chr10 2 CH_osaindica_120 3 9 0.000000336231
Oryza sativa Kitaake Chr10 2 CH_osak_139 3 4 0.0000000190085
Oryza sativa ssp. japonica chr10 2 CH_osa_99 3 6 0.0000000836696
Oropetium thomaeum Chromosome_1 2 CH_oth_186 2 3 0.000213546
Panicum hallii Chr09 2 CH_pha_292 2 3 0.000174327
Sorghum bicolor Chr01 2 CH_sbi_290 2 2 0.0000586682
Spirodela polyrhiza pseudo11 2 CH_spo_47 3 3 0.0000000155827
Saccharum spontaneum Chr1B 2 CH_ssp_519 3 9 0.0000118289
Zoysia japonica ssp. nagirizaki Zjn_sc00020.1 2 CH_zjn_177 2 2 0.000221971
Zoysia japonica ssp. nagirizaki Zjn_sc00017.1 2 CH_zjn_178 2 2 0.000221971

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001