Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB5-RAB7-dependent pathway.RAB5 nucleotide exchange factor (VPS9)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Asparagus officinalis AsparagusV1_10 1 CH_aof_165 2 2 0.000453549
Amborella trichopoda AmTr_v1.0_scaffold00099 1 CH_atr_292 2 2 0.000476644
Lolium perenne Lp_chr4_0 1 CH_lpe_13 7 37 7.14781e-18
Oryza alta GWHAZTO00000001 1 CH_oal_631 2 2 0.00030227
Oryza alta GWHAZTO00000003 1 CH_oal_807 2 3 0.000906777
Populus trichocarpa Chr13 1 CH_ptr_436 2 2 0.000346801
Sequoiadendron giganteum chr2 1 CH_sgi_402 3 3 0.00000000355983
Triticum aestivum Chr5B 1 CH_tae_1275 2 2 0.000392839
Zoysia japonica ssp. nagirizaki Zjn_sc00002.1 1 CH_zjn_139 2 2 0.000110986
Asparagus officinalis AsparagusV1_10 2 CH_aof_165 2 2 0.000453549
Amborella trichopoda AmTr_v1.0_scaffold00099 2 CH_atr_292 2 2 0.000476644
Lolium perenne Lp_chr4_0 2 CH_lpe_13 7 37 7.14781e-18
Oryza alta GWHAZTO00000001 2 CH_oal_631 2 2 0.00030227
Oryza alta GWHAZTO00000003 2 CH_oal_807 2 3 0.000906777
Populus trichocarpa Chr13 2 CH_ptr_436 2 2 0.000346801
Sequoiadendron giganteum chr2 2 CH_sgi_402 3 3 0.00000000355983
Triticum aestivum Chr5B 2 CH_tae_1275 2 2 0.000392839
Zoysia japonica ssp. nagirizaki Zjn_sc00002.1 2 CH_zjn_139 2 2 0.000110986

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001