Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase guanyl-nucleotide exchange.RAB-H1 GTPase nucleotide exchange factor (LOT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Asparagus officinalis AsparagusV1_05 1 CH_aof_130 2 2 0.000226775
Phyllostachys edulis hic_scaffold_8 1 CH_ped_329 2 2 0.000122237
Sequoiadendron giganteum chr2 1 CH_sgi_849 2 2 0.0000487151
Zea mays B104 scaffold10.2339 1 CH_zma-b104_25 2 2 0.000304785
Asparagus officinalis AsparagusV1_05 2 CH_aof_130 2 2 0.000226775
Phyllostachys edulis hic_scaffold_8 2 CH_ped_329 2 2 0.000122237
Sequoiadendron giganteum chr2 2 CH_sgi_849 2 2 0.0000487151
Zea mays B104 scaffold10.2339 2 CH_zma-b104_25 2 2 0.000304785

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001