Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.Golgi-ER retrograde trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.subunit alpha

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Oryza alta GWHAZTO00000015 1 CH_oal_630 2 2 0.00030227
Oryza brachyantha 3 1 CH_obr_231 2 2 0.000179201
Oryza sativa ssp. indica Chr3 1 CH_osaindica_285 2 2 0.000154983
Oryza sativa Kitaake Chr3 1 CH_osak_364 2 2 0.000168857
Oryza sativa ssp. japonica chr03 1 CH_osa_347 2 4 0.000475289
Phyllostachys edulis hic_scaffold_15 1 CH_ped_430 2 2 0.000407456
Oryza alta GWHAZTO00000015 2 CH_oal_630 2 2 0.00030227
Oryza brachyantha 3 2 CH_obr_231 2 2 0.000179201
Oryza sativa ssp. indica Chr3 2 CH_osaindica_285 2 2 0.000154983
Oryza sativa Kitaake Chr3 2 CH_osak_364 2 2 0.000168857
Oryza sativa ssp. japonica chr03 2 CH_osa_347 2 4 0.000475289
Phyllostachys edulis hic_scaffold_15 2 CH_ped_430 2 2 0.000407456

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001