Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.non-catalytic polygalacturonase regulator

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Calamus simplicifolius scaffold664 1 CH_calsi_237 2 2 0.000201396
Dioscorea dumetorum contig200 1 CH_ddu_125 3 5 0.00000601234
Dioscorea dumetorum contig199 1 CH_ddu_130 3 6 0.0000120224
Sequoiadendron giganteum chr9 1 CH_sgi_245 4 5 0.00000000000173422
Solanum lycopersicum SL4.0ch05 1 CH_sly_68 4 4 0.00000000000303328
Calamus simplicifolius scaffold664 2 CH_calsi_237 2 2 0.000201396
Dioscorea dumetorum contig200 2 CH_ddu_125 3 5 0.00000601234
Dioscorea dumetorum contig199 2 CH_ddu_130 3 6 0.0000120224
Sequoiadendron giganteum chr9 2 CH_sgi_245 4 5 0.00000000000173422
Solanum lycopersicum SL4.0ch05 2 CH_sly_68 4 4 0.00000000000303328

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001