Functional clusters

Information

  • Type MapMan
  • Description Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (QRT3)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr8 1 CH_asa_621 2 2 0.000232522
Arabidopsis thaliana Chr4 1 CH_ath_218 2 2 0.0000286492
Cenchrus purpureus GWHAORA00000005 1 CH_cpu_710 3 47 0.00023205
Magnolia biondii Chr02 1 CH_mbi_183 3 3 0.000000297199
Magnolia biondii Chr18 1 CH_mbi_68 6 49 0.00000000000711091
Populus trichocarpa Chr03 1 CH_ptr_111 4 9 0.000000000364899
Sequoiadendron giganteum chr5 1 CH_sgi_1094 2 2 0.000146145
Solanum lycopersicum SL4.0ch02 1 CH_sly_328 2 2 0.0000586941
Vanilla planifolia CM028150.1 1 CH_vpl_16 4 4 0.00000000000605147
Zostera marina Chr03 1 CH_zosmarina_122 2 2 0.0000965577
Allium sativum chr8 2 CH_asa_621 2 2 0.000232522
Arabidopsis thaliana Chr4 2 CH_ath_218 2 2 0.0000286492
Cenchrus purpureus GWHAORA00000005 2 CH_cpu_710 3 47 0.00023205
Magnolia biondii Chr02 2 CH_mbi_183 3 3 0.000000297199
Magnolia biondii Chr18 2 CH_mbi_68 6 49 0.00000000000711091
Populus trichocarpa Chr03 2 CH_ptr_111 4 9 0.000000000364899
Sequoiadendron giganteum chr5 2 CH_sgi_1094 2 2 0.000146145
Solanum lycopersicum SL4.0ch02 2 CH_sly_328 2 2 0.0000586941
Vanilla planifolia CM028150.1 2 CH_vpl_16 4 4 0.00000000000605147
Zostera marina Chr03 2 CH_zosmarina_122 2 2 0.0000965577

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001